In Thaliehln/timci: Data management and visualisation for the TIMCI project
type_comparison <- comparison=="type"
area_comparison <- comparison=="area"
df1 <- NULL
df2 <- NULL
df3 <- NULL
fig_df <- fig_df %>%
merge(research_facilities,
by.x = facility_col,
by.y = 'facility_id',
all.x = TRUE)
tmp <- fig_df %>%
dplyr::group_by(!!rlang::sym(date_col),!!rlang::sym(facility_col)) %>%
dplyr::count()
max_val = max(tmp$n)
df1 <- fig_df %>%
dplyr::filter(type == "Dispensary")
df2 <- fig_df %>%
dplyr::filter(type == "Health Center")
df1 <- fig_df %>%
dplyr::filter(lvl2 == "Kakamega County")
df2 <- fig_df %>%
dplyr::filter(lvl2 == "Kitui County")
df3 <- fig_df %>%
dplyr::filter(lvl2 == "Uasin Gishu County")
lbl1 <- "Kakamega County"
lbl2 <- "Kitui County"
lbl3 <- "Uasin Gishu County"
df1 <- fig_df %>%
dplyr::filter(lvl2 == "Kaliua")
df2 <- fig_df %>%
dplyr::filter(lvl2 == "Sengerema")
df3 <- fig_df %>%
dplyr::filter(lvl2 == "Tanga")
df1 <- fig_df %>%
dplyr::filter(lvl2 == "Deoria")
df2 <- fig_df %>%
dplyr::filter(lvl2 == "Sitapur")
df3 <- fig_df %>%
dplyr::filter(lvl2 == "Unnao")
timci::plot_scatter_by_facility_over_time(df = df1,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 4,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 4,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 3,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 3,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 4,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = fig_df,
facility_col = facility_col,
date_col = date_col,
date_lbl = date_lbl,
date_break_str = dbreak_duration,
date_format = date_format,
start_date = start_date,
end_date = lock_date,
y_col = y_col,
y_lbl = y_lbl,
y_is_time = y_is_time,
time_break_str = time_break_str,
time_format = time_format,
y_min = y_min,
y_max = y_max,
n_facet_per_row = 5,
text_size = tsize)
Thaliehln/timci documentation built on April 8, 2024, 3:38 p.m.
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type_comparison <- comparison=="type" area_comparison <- comparison=="area" df1 <- NULL df2 <- NULL df3 <- NULL
fig_df <- fig_df %>% merge(research_facilities, by.x = facility_col, by.y = 'facility_id', all.x = TRUE) tmp <- fig_df %>% dplyr::group_by(!!rlang::sym(date_col),!!rlang::sym(facility_col)) %>% dplyr::count() max_val = max(tmp$n)
df1 <- fig_df %>% dplyr::filter(type == "Dispensary") df2 <- fig_df %>% dplyr::filter(type == "Health Center")
df1 <- fig_df %>% dplyr::filter(lvl2 == "Kakamega County") df2 <- fig_df %>% dplyr::filter(lvl2 == "Kitui County") df3 <- fig_df %>% dplyr::filter(lvl2 == "Uasin Gishu County") lbl1 <- "Kakamega County" lbl2 <- "Kitui County" lbl3 <- "Uasin Gishu County"
df1 <- fig_df %>% dplyr::filter(lvl2 == "Kaliua") df2 <- fig_df %>% dplyr::filter(lvl2 == "Sengerema") df3 <- fig_df %>% dplyr::filter(lvl2 == "Tanga")
df1 <- fig_df %>% dplyr::filter(lvl2 == "Deoria") df2 <- fig_df %>% dplyr::filter(lvl2 == "Sitapur") df3 <- fig_df %>% dplyr::filter(lvl2 == "Unnao")
timci::plot_scatter_by_facility_over_time(df = df1, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 4, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 4, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 3, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 3, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 4, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df1, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df2, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = df3, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
timci::plot_scatter_by_facility_over_time(df = fig_df, facility_col = facility_col, date_col = date_col, date_lbl = date_lbl, date_break_str = dbreak_duration, date_format = date_format, start_date = start_date, end_date = lock_date, y_col = y_col, y_lbl = y_lbl, y_is_time = y_is_time, time_break_str = time_break_str, time_format = time_format, y_min = y_min, y_max = y_max, n_facet_per_row = 5, text_size = tsize)
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