get_block_allele: Get allele assignments for linkage blocks

In TheJacksonLaboratory/cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Get allele assignments for linkage blocks

Description

This is an internal function used by plot_full_network to retrieve the allele names contained in linkage blocks for plotting using the appropriate colors.

Usage

get_block_allele(data_obj, block_name, collapsed_net)

Arguments

data_obj	The cape object
block_name	The name of the linkage block as defined by the name of the list called linkage_blocks_full or linkage_blocks_collapsed
collapsed_net	A logical value indicating whether the block names to be used are from linkage_blocks_collapsed (TRUE) or linkage_blocks_full (FALSE)

Value

A vector of the alleles contained in the linkage block

TheJacksonLaboratory/cape documentation built on Feb. 12, 2024, 4:34 p.m.