Man pages for ThomasCarroll/basecallQC
Working with Illumina Basecalling and Demultiplexing input and output files
| baseCallMetrics | Gather basecalling metrics from a Run (using Run's... |
| basecallQC | The basecallQC object and constructor. |
| BCL2FastQparams | The Parameters for BCL2FastQparams object. |
| createBasemasks | Function to create basemasks for basecalling from Illumina... |
| createBCLcommand | Function to create command for Illumina... |
| demultiplexMetrics | Gather demultiplexing metrics from a Run (using Run's... |
| demuxBarplot | Barplot of Illumina demultiplexing statistics. |
| demuxBoxplot | Boxplot of Illumina demultiplexing statistics. |
| indexlengths | Index lengths |
| interOpsReport | Function to parse InterOps files and generate summary reports |
| makeFQTable | Generate an HTML table linking to per sample summary fastq QC... |
| passFilterBar | Barplot of Illumina basecalling statistics for reads passing... |
| passFilterBoxplot | Boxplot of Illumina basecalling statistics for reads passing... |
| passFilterTileplot | Tile plot of Illumina basecalling statistics for reads... |
| readlengths | Read lengths |
| reportBCL | Generate basecallQC report |
| summaryConvStatsTable | Creates an HTML table of per sample summary statistics from... |
| summaryDemuxTable | Generate an HTML table of per sample summary demultiplexing... |
| validateBCLSheet | Illumina sample sheet cleaning and updating for bcl2Fastq... |
