indexlengths: Index lengths
In ThomasCarroll/basecallQC: Working with Illumina Basecalling and Demultiplexing input and output files
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Index lengths as defined by runParameters.xml
Usage
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## S4 method for signature 'BCL2FastQparams'
indexlengths(object)
## S4 method for signature 'BCL2FastQparams'
indexlengths(object = "BCL2FastQparams")
Arguments
object
A BCL2FastQparams object
Value
Index lengths as defined runParameters.xml.
Author(s)
Thomas Carroll
Examples
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fileLocations <- system.file("extdata",package="basecallQC")
runXML <- dir(fileLocations,pattern="runParameters.xml",full.names=TRUE)
config <- dir(fileLocations,pattern="config.ini",full.names=TRUE)
bcl2fastqparams <- BCL2FastQparams(runXML,config,runDir=getwd(),verbose=FALSE)
indexlength <- indexlengths(bcl2fastqparams)
ThomasCarroll/basecallQC documentation built on May 9, 2019, 4:45 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Index lengths as defined by runParameters.xml
Usage
1 2 3 4 5 | ## S4 method for signature 'BCL2FastQparams'
indexlengths(object)
## S4 method for signature 'BCL2FastQparams'
indexlengths(object = "BCL2FastQparams")
|
Arguments
object |
A BCL2FastQparams object |
Value
Index lengths as defined runParameters.xml.
Author(s)
Thomas Carroll
Examples
1 2 3 4 5 | fileLocations <- system.file("extdata",package="basecallQC")
runXML <- dir(fileLocations,pattern="runParameters.xml",full.names=TRUE)
config <- dir(fileLocations,pattern="config.ini",full.names=TRUE)
bcl2fastqparams <- BCL2FastQparams(runXML,config,runDir=getwd(),verbose=FALSE)
indexlength <- indexlengths(bcl2fastqparams)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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