orientBy: Set strand by overlapping or nearest anchor GRanges

In ThomasCarroll/soGGi: Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals

Description

Set strand by overlapping or nearest anchor GRanges

Usage

orientBy(testRanges, anchorRanges)

Arguments

testRanges	The GRanges object to anchor.
anchorRanges	A GRanges object by which to anchor strand orientation.

Value

newRanges A GRanges object.

Examples

data(ik_Example)
strand(ik_Example[[1]]) <- "+"
anchoredGRanges <- orientBy(ik_Example[[2]],ik_Example[[1]])

ThomasCarroll/soGGi documentation built on May 7, 2019, 8:40 a.m.