areaQuadrantTime: Area chart for percentage of quadrant time

In Thonnard/VisualMWM: R functions to visualize Morris water maze data

Area chart for percentage of quadrant time

Description

areaQuadrantTime creates a geom_area plot showing the percentage of time spent per quadrant for a specific trial of one animal, visualized in a stacked area plot. This function returns the graph as a ggplot object and saves the image (default = jpeg).

Usage

areaQuadrantTime(
  data,
  id,
  day,
  trial,
  centerx,
  centery,
  radius = 75,
  platformx,
  platformy,
  platformradius = 7.5,
  device = "jpeg",
  width = 18,
  height = 12,
  units = "cm",
  dpi = 300,
  viridis_color_palette = "D",
  theme_settings = NULL,
  title = NA
)

Arguments

data	Data set containing at least following columns: "Time", "x", "y", "Animal", "Day", "Trial". "x" and "y" represent the coordinates (position) of the animal at a certain timepoint ("Time") during the trial.
id	ID of the animal
day	day number
trial	trial number
centerx	x coordinate of the center of the morris water maze (cm)
centery	y coordinate of the center of the morris water maze (cl)
radius	radius of the morris water maze (cm), default = 75
platformx	x coordinate of the center of the platform (cm)
platformy	y coordinate of the center of the platform (cm)
platformradius	radius of the platform (cm), default = 7.5
device	Device for the graph. Options: "png", "eps", "ps", "tex", "pdf", "jpeg", "tiff", "png", "bmp", "svg", "wmf"
width	Width of the graph, default = 18
height	Height of the graph, default = 12
units	Units. Options: "in", "cm", "mm". Default = "cm".
dpi	Resolution. Default = 300
viridis_color_palette	Viridus color palette. Options: "A", "B", "C", "D", "E". Default = "D".
theme_settings	Optional parameter that passes list of arguments to ggplot2's theme() function.
title	Add title to GIF. Default = NA

Thonnard/VisualMWM documentation built on June 29, 2023, 11:18 a.m.