barGIF: Bar chart for percentage of quadrant time

In Thonnard/VisualMWM: R functions to visualize Morris water maze data

Bar chart for percentage of quadrant time

Description

The barGIF function creates a GIF showing the percentage of time spent per quadrant for a specific trial of one animal.

Usage

barGIF(
  data,
  id,
  day,
  trial,
  centerx,
  centery,
  radius = 75,
  platformx,
  platformy,
  platformradius = 7.5,
  bar_colours = c("#F8766D", "#7CAE00", "#00BFC4", "#C77CFF"),
  show_time = FALSE,
  loop = FALSE,
  width = 480,
  height = 480,
  fps = 10,
  duration = 10,
  frames = 100,
  time_bins = 50,
  theme_settings = NULL,
  title = NA
)

Arguments

data	Data set containing at least following columns: "Time", "x", "y", "Animal", "Day", "Trial". "x" and "y" represent the coordinates (position) of the animal at a certain timepoint ("Time") during the trial.
id	ID of the animal
day	day number
trial	trial number
centerx	x coordinate of the center of the morris water maze (cm)
centery	y coordinate of the center of the morris water maze (cl)
radius	radius of the morris water maze (cm), default = 75
platformx	x coordinate of the center of the platform (cm)
platformy	y coordinate of the center of the platform (cm)
platformradius	radius of the platform (cm), default = 7.5
bar_colours	Colours of the four bars. Default = c("#F8766D","#7CAE00", "#00BFC4", "#C77CFF")
show_time	Show time-bins (s) as subtitle (ggplot). Default = FALSE
loop	Loop the animation, default = FALSE
width	Width of the animation (px), default = 480
height	Height of the animation (px), default = 480
fps	Frames per second of the animation, default = 10
duration	Duration of the animation(s), default = 10
frames	Number of frames in the animation, default = 100
time_bins	Number of time-bins in the animation, default = 50
theme_settings	Optional parameter that passes list of arguments to ggplot2's theme() function.
title	Add title to GIF. Default = NA

Thonnard/VisualMWM documentation built on June 29, 2023, 11:18 a.m.