Multi Environment Trials Analysis

AMMI_indexes | AMMI-based stability indexes |

Annicchiarico | Annicchiarico's genotypic confidence index |

anova_ind | Within-environment analysis of variance |

as.lpcor | Coerce to an object of class lpcor |

as.split_factors | Coerce to an object of class split_factors |

autoplot.waas | Several types of residual plots |

autoplot.WAAS.AMMI-deprecated | Several types of residual plots |

autoplot.WAASB | Several types of residual plots |

bind_cv | Bind cross-validation objects |

can_corr | Canonical correlation analysis |

clustering | Clustering analysis |

colindiag | Collinearity Diagnostics |

comb_vars | Pairwise combinations of variables |

corr_ci | Confidence interval for correlation coefficient |

corr_plot | Visualization of a correlation matrix |

corr_ss | Sample size planning for a desired Pearson's correlation... |

covcor_design | Variance-covariance matrices for designed experiments |

cv_ammi | Cross-validation procedure |

cv_ammif | Cross-validation procedure |

cv_blup | Cross-validation procedure |

data_ge | Data for examples |

data_ge2 | Data for examples |

ecovalence | Stability analysis based on Wricke's model |

fai_blup | Multi-trait selection index |

find_outliers | Find possible outliers in a dataset |

ge_factanal | Stability analysis and environment estratification |

ge_plot | Graphical analysis of genotype-vs-environment interaction |

ge_reg | Eberhart and Russell's regression model |

ge_stats | Statistics for genotype-vs-environment interaction |

gge | Produces genotype plus genotype-by-environment model |

int.effects | Data for examples |

is.lpcor | Coerce to an object of class lpcor |

is.split_factors | Check if an object is of class split_factors |

lpcor | Linear and Partial Correlation Coefficients |

mahala | Mahalanobis Distance |

mahala_design | Mahalanobis distance using data from a designed experiment |

make_mat | Make a two-way table |

make_sym | Make a symmetric matrix on a triangular matrix |

meansGxE | Data for examples |

metan-deprecated | Deprecated functions in package 'metan'. |

metan-package | Multi-Environment Trial Analysis |

mtsi | Multi-trait stability index |

pairs_mantel | Mantel test for a set of correlation matrices |

path_coeff | Path coefficients with minimal multicollinearity |

performs_ammi | Additive Main effects and Multiplicative Interaction |

plot_blup | Plot the BLUPs for genotypes |

plot_ci | Plot the confidence interval for correlation |

plot.clustering | Plot an object of class clustering |

plot.cv_ammif | Plot the RMSPD of a cross-validation procedure |

plot_eigen | Plot the eigenvalues |

plot_factbars | Fast way to create a bar plot |

plot_factlines | Fast way to create a line plot |

plot.fai_blup | Multi-trait selection index |

plot.ge_factanal | Plot the ge_factanal model |

plot.ge_reg | Plot an object of class ge_reg |

plot.gge | Create GGE biplots |

plot_lines | Fast way to create a line plot |

plot.mtsi | Plot the multi-trait stability index |

plot.resp_surf | Plot the response surface model |

plot_scores | Plot scores in different graphical interpretations |

plot_waasby | Plot WAASBY values for genotype ranking |

plot.wsmp | Plot heat maps with genotype ranking |

predict.gge | Predict a two-way table based on GGE model |

predict.waas | Predict the means of a waas object |

rbind_fill | Combining data.frames by row, filling missing values |

resca | Rescale a variable to have specified minimum and maximum... |

resende_indexes | Stability indexes based on a mixed-effect model |

resp_surf | Response surface model |

solve_svd | Pseudoinverse of a square matrix |

split_factors | Split a data frame by factors |

summary.Annicchiarico | Summary an Annicchiarico object |

summary.can_cor | Summarise an object of class can_cor |

summary.ge_factanal | Summary a ge_factanal object |

summary.ge_reg | Summary a ge_reg object |

summary.ge_stats | Summary a ge_stats object |

summary.mtsi | Summarise a mtsi object |

summary.path_coeff | Summarize an object generated by the function 'path_coeff()' |

summary.superiority | Summary a superiority object |

summary.waas | Summarise a waas object |

summary.WAASB | Summary a waasb object |

superiority | Lin e Binns' superiority index |

theme_waasb | A personalized theme for ggplot2-based graphics |

waas | Weighted Average of Absolute Scores |

WAAS.AMMI-deprecated | Weighted Average of Absolute Scores |

WAASB | Weighted Average of Absolute Scores |

WAASBYratio-deprecated | Different scenarios of stability and mean performance |

WAASratio.AMMI-deprecated | Plot heat maps with genotype ranking |

wsmp | Weighting between stability and mean performance |

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