Man pages for TianshuFeng/SemiMapper
Semi-supervised Topological Analysis
| auto_set_colorcode | Create color codes for groups. |
| check_color_code | Check the validation of a color code dataframe |
| chicken_generator | Chicken foot simulation data generator |
| color_map | Assign color codes to samples |
| color_map_Spectral | Spectral color map function |
| color_mixer | Color mixer |
| filter_coordinate | Coordinate projection filter |
| filter_dtm | Distance to measure filter |
| filter_eccen | Eccentricity filter |
| filter_evaluate | Evaluate filter functions |
| filter_gaussian | Gaussian density filter |
| filter_Linf | L-infinity filter |
| filter_name | Which filter function produces the filter? |
| filter_pca | PCA filter |
| filter_ref | Reference distance filter |
| legend_node | Add legends to the generated graph |
| load_network_h5 | Load a h5 file |
| mapperEdges | mapperEdges function |
| mapper.kmeans | Mapper function with multiple cluster methods (deprecated) |
| mapper_shannon_index | Shannon index for Mapper |
| mapper.sta | Mapper function with multiple cluster methods |
| mapperVertices | mapperVertices function |
| network_visualization | Generate graphs from results of Mapper |
| null_remover | Remove NULL nodes in the graph |
| pareto_opt | Find the pareto frontier |
| print.filter | Print filter function name |
| print.Pareto_frontier | Print Pareto frontier |
| read_color_code | Read color codes from a given file |
| ref_dist_nodewise | Nodewise topological distance to a node |
| ref_dist_samplewise | Average samplewise topological distance to a group of nodes |
| save_network_h5 | Save results into a h5 file |
| simple_visNet | Simple graphs generation |
| spread_measure | Spread measure function |
| stat_summery | Create statistics summary of nodes |
