GenomicRangeToGeneName: GenomicRangeToGeneName
In TomHarrop/oryzr: Work with Oryza sativa gene identifiers
Description
Usage
Arguments
Value
See Also
Description
Return information for all of the genes in a genomic region.
Usage
1
GenomicRangeToGeneName(seqnames, start, end)
Arguments
seqnames
A chr containing the sequence (i.e.
chromosome) name. Must match the chromosome name in the MSUv7 GFF,
e.g. chromosome 1 == 'Chr1'
start
A numeric containing the starting coordinate on
seqnames
end
A numeric containing the end coordinat on seqnames
Value
Returns a data.table of annotated genes found in the MSUv7
GFF between start and end on chromosome seqnames.
See Also
LocToGeneName for a description of the returned
data.table.
TomHarrop/oryzr documentation built on May 9, 2019, 4:52 p.m.
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Description Usage Arguments Value See Also
Description
Return information for all of the genes in a genomic region.
Usage
1 | GenomicRangeToGeneName(seqnames, start, end)
|
Arguments
seqnames |
A |
start |
A |
end |
A |
Value
Returns a data.table of annotated genes found in the MSUv7
GFF between start and end on chromosome seqnames.
See Also
LocToGeneName for a description of the returned
data.table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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