oryzr: oryzr: Work with Oryza sativa gene identifiers.
In TomHarrop/oryzr: Work with Oryza sativa gene identifiers
Description
Convert between different types of gene identifiers for Oryza sativa
L. ssp. japonica cv. Nipponbare genes (MSU, Rap-DB, CSGNL, RefSeq
mRNA).
Functions
-
LocToGeneName: Convert MSU
identifiers to CSGNL gene names and symbols and generate a label for
plotting if requested.
-
LocToRefSeq: Convert MSU
identifiers to Rap-DB identifiers and map them to RefSeq mRNA identifiers.
-
SearchByGeneSymbol: Search Rap-DB and oryzabase
information by gene symbol and return identifiers for potential matches.
TomHarrop/oryzr documentation built on May 9, 2019, 4:52 p.m.
R Package Documentation
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Description
Convert between different types of gene identifiers for Oryza sativa L. ssp. japonica cv. Nipponbare genes (MSU, Rap-DB, CSGNL, RefSeq mRNA).
Functions
-
LocToGeneName: Convert MSU identifiers to CSGNL gene names and symbols and generate a label for plotting if requested. -
LocToRefSeq: Convert MSU identifiers to Rap-DB identifiers and map them to RefSeq mRNA identifiers. -
SearchByGeneSymbol: Search Rap-DB and oryzabase information by gene symbol and return identifiers for potential matches.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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