Files in TomasettiLab/supersigs
Supervised mutational signatures
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/SuperSig-class.R
R/all_my_auc.R
R/condense_mutations.R
R/context_matters.R
R/convert_to_level3.R
R/example_dt.R
R/feature_selection.R
R/generate_min_sigma_algebra.R
R/get_signature.R
R/globals.R
R/make_matrix.R
R/my_auc.R
R/partial_signature.R
R/predict_signature.R
R/process_vcf.R
R/simplify_signature.R
R/supersig_classifier.R
R/supersig_ls.R
R/sysdata.rda
R/transform_data.R
README.Rmd
README.md
_pkgdown.yml
data-raw/SaveExternalData.R
data-raw/SaveInternalData.R
data/example_dt.rda
data/supersig_ls.rda
docs/404.html
docs/articles/index.html
docs/articles/supersigs.html
docs/articles/supersigs_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/supersigs_files/figure-html/unnamed-chunk-9-1.png
docs/articles/supersigs_files/header-attrs-2.6/header-attrs.js
docs/articles/supersigs_files/header-attrs-2.7/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/SuperSig-class.html
docs/reference/example_dt.html
docs/reference/get_signature.html
docs/reference/index.html
docs/reference/make_matrix.html
docs/reference/partial_signature.html
docs/reference/predict_signature.html
docs/reference/process_vcf.html
docs/reference/simplify_signature.html
docs/reference/supersig_ls.html
man/SuperSig-class.Rd
man/example_dt.Rd
man/get_signature.Rd
man/make_matrix.Rd
man/partial_signature.Rd
man/predict_signature.Rd
man/process_vcf.Rd
man/simplify_signature.Rd
man/supersig_ls.Rd
tests/testthat.R
tests/testthat/test_auc.R
tests/testthat/test_context_matters.R
tests/testthat/test_convert_mutations.R
tests/testthat/test_get_signature.R
tests/testthat/test_gmsa.R
tests/testthat/test_make_matrix.R
vignettes/.gitignore
vignettes/supersigs.Rmd
