API for TransmissibleCancerGroup/dftdLowCov
| Global functions | |
|---|---|
| chrom_ranges_from_lengths | Man page |
| clade_colours | Man page |
| coverage_depth_summary | Man page |
| coverage_histogram | Man page Source code |
| depth_of_coverage | Man page |
| do_simulation | Man page |
| get_aberrant_copy_number_per_sample | Man page |
| get_depth | Man page Source code |
| hello | Man page |
| is.overlap | Man page |
| isCarcinoma | Man page Source code |
| isCellLine | Man page Source code |
| isDFT1 | Man page Source code |
| isDFT2 | Man page Source code |
| isMarker5 | Source code |
| isMultiGain | Man page Source code |
| isMultiLoss | Man page Source code |
| isNonDFTD | Man page Source code |
| is_variant_site | Man page |
| load_chromosome_lengths | Man page Source code |
| load_cnv_table | Man page Source code |
| load_sample_table | Man page Source code |
| load_subject_from_finalised_cnvs | Source code |
| make_bins | Source code |
| make_coordinates | Man page |
| make_presence_absence_table | Man page |
| make_segmatch | Source code |
| pad | Man page |
| parse_aberrant_copy_number_states | Man page |
| parse_sample_cnv_group | Man page |
| parse_sample_cnv_group_and_count | Man page Source code |
| parse_sample_cnv_group_with_clade | Man page |
| plot_chromosome_map | Man page |
| preprocess_for_simulation | Man page |
| randomize_positions_over_whole_genome | Man page |
| rectangle_packing | Man page Source code |
| rectangle_packing2 | Man page Source code |
| rectangle_packing3 | Man page Source code |
| rectangle_packing4 | Man page Source code |
| scan_col | Man page Source code |
| split_chars | Man page |
| wrap_around | Man page |
| write_fasta | Man page |
