coverage_depth_summary: Counts the number of bases covered by 0, 1, 2 etc CNV...
In TransmissibleCancerGroup/dftdLowCov:
Description
Counts the number of bases covered by 0, 1, 2 etc CNV intervals
Usage
1
coverage_depth_summary(data, chrlengths, endpos_is_inclusive)
Arguments
data
- data.table of CNV intervals
chrlengths
- data.table of chromosome lengths
endpos_is_inclusive
- TRUE means an interval [start=10, end=20] includes the last position,
so is 11 bases long (i.e. 10, 11, 12, ..., 19, 20]. FALSE means an interval [start=10, end=20]
excludes the last position, and is 10 bases long, because it stops at 19.
TransmissibleCancerGroup/dftdLowCov documentation built on May 29, 2020, 7:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Counts the number of bases covered by 0, 1, 2 etc CNV intervals
Usage
1 | coverage_depth_summary(data, chrlengths, endpos_is_inclusive)
|
Arguments
data |
- data.table of CNV intervals |
chrlengths |
- data.table of chromosome lengths |
endpos_is_inclusive |
- TRUE means an interval [start=10, end=20] includes the last position, so is 11 bases long (i.e. 10, 11, 12, ..., 19, 20]. FALSE means an interval [start=10, end=20] excludes the last position, and is 10 bases long, because it stops at 19. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.