Files in TransmissibleCancerGroup/dftdLowCov

R/breakpoint_reuse.R R/chromosome_map_plotting_functions.R R/chromosome_map_utility_functions.R R/cnv_categorisation.R R/data.R R/qual_control.R R/rectangle_packing.R R/simulation.R R/utilities.R README.md man/chrom_ranges_from_lengths.Rd man/clade_colours.Rd man/coverage_depth_summary.Rd man/coverage_histogram.Rd man/depth_of_coverage.Rd man/do_simulation.Rd man/get_aberrant_copy_number_per_sample.Rd man/get_depth.Rd man/hello.Rd man/is.overlap.Rd man/isCarcinoma.Rd man/isCellLine.Rd man/isDFT1.Rd man/isDFT2.Rd man/isMultiGain.Rd man/isMultiLoss.Rd man/isNonDFTD.Rd man/is_variant_site.Rd man/load_chromosome_lengths.Rd man/load_cnv_table.Rd man/load_sample_table.Rd man/make_coordinates.Rd man/make_presence_absence_table.Rd man/pad.Rd man/parse_aberrant_copy_number_states.Rd man/parse_sample_cnv_group.Rd man/parse_sample_cnv_group_and_count.Rd man/parse_sample_cnv_group_with_clade.Rd man/plot_chromosome_map.Rd man/preprocess_for_simulation.Rd man/randomize_positions_over_whole_genome.Rd man/rectangle_packing.Rd man/rectangle_packing2.Rd man/rectangle_packing3.Rd man/rectangle_packing4.Rd man/scan_col.Rd man/split_chars.Rd man/wrap_around.Rd man/write_fasta.Rd