plot_cells: plot_cells

In TrigosTeam/spaSim: Spatial point data simulator for tissue images

plot_cells

Description

Produces a scatter plot of the cells in the tissue. Cells are coloured categorically by Cell.Type column. Cell categories not specified will be coloured "lightgrey" and labled "Unspecified".

Usage

plot_cells(
  spe_object,
  categories_of_interest = NULL,
  colour_vector = NULL,
  feature_colname = "Cell.Type"
)

Arguments

spe_object	SpatialExperiment object or a data.frame that has cell locations and cell type info.
categories_of_interest	String Vector of cell categories to be coloured.
colour_vector	String Vector specifying the colours of each cell type.
feature_colname	String specifying the column the cell categories belong to.

Value

A plot is returned

TrigosTeam/spaSim documentation built on May 25, 2023, 4:20 p.m.