README.md

In UCL-Research-Department-of-Pathology/panConusig: Pan-cancer copy number signatures analysis

panConusig

Package for analysis of pan-cancer copy number signatures

Dependencies: GenomicRanges, parallel, pbmcapply, stringr

For matrix generation: getMatrix()

For simulation of CN profiles: generateProfile()

For plotting of CN profiles: plotCNprofile()

For artifical genome doubling of signatures: getGDsig()

For assignment of signatures to segments: runAssignment()

For enumeration of recurrence of signatures across the genome: getRecurrence(), plotRecurrence()

For plotting of signature definitions: plotSigDefinitions()

For simulation of signature recurrence: randomRecurrence()

UCL-Research-Department-of-Pathology/panConusig documentation built on March 25, 2022, 12:18 a.m.