cran-comments.md

In UCL/ADMUR: Ancient Demographic Modelling Using Radiocarbon

ADMUR version 1.0.3

Round 1: 2021-03-19 This is a new submission.

Test environments

• local Windows 10, R 4.0.3
• Travis CI
• R-hub builder: Fedora Linux, R-devel, clang, gfortran
• R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
• R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
• win-builder (release)
• win-builder (devel)

R CMD check results

• There was 1 NOTE:
• Package was archived on CRAN CRAN repository db overrides: X-CRAN-Comment: Archived on 2021-01-30 as check problems were not corrected in time.

Downstream dependencies

I have run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

What changed

• All calls to svg() replaced with png() following request from Prof Brian Ripley on 2021-01-16. Aplogies for the delay in fixing this.

ADMUR version 1.0.2

Round 1: 2021-01-26 This is a new submission.

Test environments

• local Windows 10, R 4.0.3
• Travis CI
• R-hub builder: Fedora Linux, R-devel, clang, gfortran
• R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
• R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
• win-builder (release)
• win-builder (devel)

R CMD check results

• There were no ERRORs, no WARNINGs, no NOTES

Downstream dependencies

I have run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

What changed

• svg() now imported from grDevices in NAMESPACE and DESCRIPTION, following request from Prof Brian Ripley on 2021-01-16.
• 14C datasets from taphonomic papers added (Surovell, Bluhm, Bryson etc).
• Substantial update to guide, detailing taphonomy.
• Taphonomy parameter incorporated into convertPars(), objectiveFunction(), proposalFunction(), mcmc().
• New CPLparsToHinges() helper function purely to handle converting CPL parameters into hinges.

ADMUR version 1.0.1

Round 2: 2020-11-29 This is a resubmission.

In this version I have: * reduced tarball size from 7.8 MB to 4.1 MB Many thanks to Uwe Ligges for helpful advice.

Round 1: 2020-11-28 This is a new submission.

Please accept my apologies for the short period since last submission (23 days). Much development has been done in this time. I anticipate a much longer period before next submission.

Test environments

• local Windows 10, R 4.0.3
• Travis CI
• R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
• R-hub builder: Fedora Linux, R-devel, clang, gfortran
• R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
• win-builder (release)
• win-builder (devel)

R CMD check results

• There were no ERRORs or WARNINGs.
• There was 1 NOTE: Maintainer: 'Adrian Timpson [e-mail]' Found the following (possibly) invalid URLs: URL: https://doi.org/10.1098/rstb.2019.0723

Downstream dependencies

I have also run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

Further comments

• The possibly invalid URL is actually correct, the paper is in press and will go live on 2020-11-30

What changed

• Added a logistic model.
• Added three toy datasets.
• New section in guide, exploring further models.
• Substantial improvement in the area breaking algorithm, total rebuild of convertParsCPL().
• Added a Cauchy model.
• Added a sigmoidal model.
• Added a Gaussian model.
• Added checkData()
• Cleaner mathematical formulae in manuals, using mathjaxr

ADMUR version 1.0.0

Round 2: 20-11-11 This is a resubmission.

In this version I have: changed all instances of \dontrun{} to \donttest{}, as these take > 5 secs. removed all changes to options(warn). Was previously used to suppress repetitive warnings if summedCalibrator() was run in a loop. I have instead added 'checks' as an argument to this function, giving user choice to suppress. removed all changes to par() within functions. ensured par() changes in vignettes are reset to user's par(). Many thanks to Gregor Seyer for hugely helpful comments.

R CMD check results

There were no ERRORs or WARNINGs. There was 1 NOTE: checking CRAN incoming feasibility ... NOTE Maintainer: 'Adrian Timpson [e-mail]'

Round 1: 2020-11-06 This is a new submission.

Test environments

• local Windows 10, R 4.0.2
• Travis CI
• win-builder (release)

R CMD check results

There were no ERRORs or WARNINGs. There was 1 NOTE: checking CRAN incoming feasibility ... NOTE Maintainer: 'Adrian Timpson [e-mail]' New submission

Downstream dependencies

I have also run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

Further comments

• The build checks identify the following correct URL: https://doi.org/10.1098/rstb.2019.0723 as 'possibly invalid', since this paper is due to be published on 2020-11-30
• The build checks identify: Possibly mis-spelled words in DESCRIPTION: SPD (11:303, 11:322) This intended initialisation is previously fully specified (Summed Probability Distribution).

UCL/ADMUR documentation built on Sept. 14, 2023, 11:41 a.m.