Man pages for UCLouvain-CBIO/scp
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
| addReducedDims | Add scplainer Component Analysis Results |
| aggregateFeaturesOverAssays | Aggregate features over multiple assays |
| computeSCR | Compute the sample over carrier ratio (SCR) |
| cumulativeSensitivityCurve | Cumulative sensitivity curve |
| divideByReference | Divide assay columns by a reference column |
| jaccardIndex | Compute the pairwise Jaccard index |
| leduc_minimal | Minimally processed single-cell proteomics data set |
| medianCVperCell | Compute the median coefficient of variation (CV) per cell |
| mqScpData | Example MaxQuant/SCoPE2 output |
| normalizeSCP | Normalize single-cell proteomics (SCP) data |
| pep2qvalue | Compute q-values |
| readSCP | Read single-cell proteomics tabular data |
| reportMissingValues | Four metrics to report missing values |
| sampleAnnotation | Single cell sample annotation |
| scp1 | Single Cell QFeatures data |
| scpAnnotateResults | Annotate single-cell proteomics analysis output |
| ScpModel-class | Class to store the results of single-cell proteomics... |
| ScpModel-ComponentAnalysis | Component analysis for single cell proteomics |
| ScpModel-DataCorrection | Correct single-cell proteomics data |
| ScpModel-DifferentialAnalysis | Differential abundance analysis for single-cell proteomics |
| ScpModelFit-class | Class to store the components of an estimated model for a... |
| ScpModel-VarianceAnalysis | Analysis of variance for single-cell proteomics |
| ScpModel-Workflow | Modelling single-cell proteomics data |
