Files in UCLouvain-CBIO/scp

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

.Rbuildignore

.editorconfig

.github/.gitignore

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md NOTES.md R/ScpModel-Class.R R/ScpModel-ComponentAnalysis.R R/ScpModel-DifferentialAnalysis.R R/ScpModel-Utils.R R/ScpModel-VarianceAnalysis.R R/ScpModel-Workflow.R R/ScpModelFit-Class.R R/compute_metrics.R R/data.R R/readSCP.R R/transform.R R/utils.R README.md

data/leduc_minimal.rda

data/mqScpData.rda

data/sampleAnnotation.rda

data/scp1.rda

inst/CITATION

inst/examples/examples_ScpModel-Annotation.R inst/examples/examples_ScpModel-Class.R inst/examples/examples_ScpModel-ComponentAnalysis.R inst/examples/examples_ScpModel-DataCorrection.R inst/examples/examples_ScpModel-DifferentialAnalysis.R inst/examples/examples_ScpModel-VarianceAnalysis.R inst/examples/examples_ScpModel-Workflow.R inst/scripts/input_example.R inst/scripts/leduc_minimal.R inst/scripts/scp1.R man/ScpModel-ComponentAnalysis.Rd man/ScpModel-DataCorrection.Rd man/ScpModel-DifferentialAnalysis.Rd man/ScpModel-VarianceAnalysis.Rd man/ScpModel-Workflow.Rd man/ScpModel-class.Rd man/ScpModelFit-class.Rd man/addReducedDims.Rd man/aggregateFeaturesOverAssays.Rd man/computeSCR.Rd man/cumulativeSensitivityCurve.Rd man/divideByReference.Rd man/jaccardIndex.Rd man/leduc_minimal.Rd man/medianCVperCell.Rd man/mqScpData.Rd man/normalizeSCP.Rd man/pep2qvalue.Rd man/readSCP.Rd man/reportMissingValues.Rd man/sampleAnnotation.Rd man/scp1.Rd man/scpAnnotateResults.Rd

sticker/sticker.png

sticker/sticker.svg

tests/testthat.R tests/testthat/test-compute_metrics.R tests/testthat/test-readSCP.R tests/testthat/test-transform.R tests/testthat/test-utils.R vignettes/QFeatures_nutshell.Rmd vignettes/advanced.Rmd

vignettes/figures/SCP_framework.png

vignettes/figures/ScpModel-class.png

vignettes/figures/feature_aggregation.png

vignettes/figures/readSCP_inputTable.png

vignettes/figures/readSCP_relation.png

vignettes/figures/readSCP_sampleTable.png

vignettes/figures/readSCP_step1.png

vignettes/figures/readSCP_step1.svg

vignettes/figures/readSCP_step2.png

vignettes/figures/readSCP_step2.svg

vignettes/figures/readSCP_step3.png

vignettes/figures/readSCP_step3.svg

vignettes/figures/readSCP_step4.png

vignettes/figures/readSCP_step4.svg

vignettes/read_scp.Rmd vignettes/reporting_missing_values.Rmd vignettes/scp.Rmd

vignettes/scp.bib

vignettes/scp_data_modelling.Rmd

UCLouvain-CBIO/scp documentation built on May 5, 2024, 1:17 a.m.