contaminants_MQ: Find contaminants
In UNIL-PAF/PAFcontaminants: Identify and remove contaminants
Description
Usage
Arguments
Examples
Description
Find all contaminants in a data.frame from MaxQuant proteinGroups.txt.
Usage
1
contaminants_MQ(proteinGroups_df)
Arguments
proteinGroups_df
A data.frame from proteinGroups.txt
Examples
1
2
3
proteinGroups_path <- system.file("extdata", "Conde_9508_sub.txt", package = "PAFcontaminants")
proteinGroups_df <- read.table(proteinGroups_path, quote='\"', row.names=NULL, header=TRUE, sep='\t', fill=TRUE, na.strings=c('Non Num\303\251rique'))
is_contaminant <-contaminants_MQ(proteinGroups_df)
UNIL-PAF/PAFcontaminants documentation built on May 24, 2019, 9:50 a.m.
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Description Usage Arguments Examples
Description
Find all contaminants in a data.frame from MaxQuant proteinGroups.txt.
Usage
1 | contaminants_MQ(proteinGroups_df)
|
Arguments
proteinGroups_df |
A data.frame from proteinGroups.txt |
Examples
1 2 3 | proteinGroups_path <- system.file("extdata", "Conde_9508_sub.txt", package = "PAFcontaminants")
proteinGroups_df <- read.table(proteinGroups_path, quote='\"', row.names=NULL, header=TRUE, sep='\t', fill=TRUE, na.strings=c('Non Num\303\251rique'))
is_contaminant <-contaminants_MQ(proteinGroups_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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