merge_proteins: merge_proteins

In UNIL-PAF/pumbaR: Parse MaxQuant data and compute theoretical molecular weights for every slice.

merge_proteins

Description

Cut every slice into tiny subslices.

Usage

merge_proteins(data, cut_size = 100, loess_span = 0.05)

Arguments

data	Named list containing mass_fit_params and ints for every replicate.
cut_size	Number of subslices per slice (default is 100)
loess_span	The span parameter used by the loess curve fitting function.

Examples

data <- list()
data[[1]] <- list()
data[[1]][['mass_fit_params']] <- c(2.92541101792906,-0.0856835305957989,
0.00229499350478187,-2.85888515674011e-05)
data[[1]][['ints']] <- c(1930800,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,3145700,4036800,6036000,6696500000,8679700000,
63454000,0,0,0,0,0,0,0,0,0)
data[[2]] <- list()
data[[2]][['mass_fit_params']] <- c(2.93157752998003,-0.0911120501100777,
0.00261614574546816,-3.38080473782906e-05)
data[[2]][['ints']] <- c(0,0,0,424060,0,0,26561000,0,0,0,8257400,0,0,0,0,
0,0,0,0,4896700,3668500,0,0,0,0,52009000,0,0,0,0,0,0,5325700,2393800,2973300,
4061200000,3175600000,35474000,25662000,18546000,0,0,7599400,0,0,5936300,0)
data[[3]] <- list()
data[[3]][['mass_fit_params']] <- c(2.86255232915833,-0.0860407095427795,
0.00249869975354482,-3.31808222647113e-05)
data[[3]][['ints']] <- c(1053800,0,0,0,0,0,0,0,3159900,1061300,0,4672100,
0,0,2268100,0,0,0,0,0,0,0,0,0,3289300,0,0,0,5302800,4653300,0,7113600,
24130000,6285400,460980000,1.3405e+10,3747900000,17037000,15226000,0,0,
17088000,3872700,0,14897000,8817200)
merged_protein <- merge_proteins(data, cut_size=100, loess_span=0.05)

UNIL-PAF/pumbaR documentation built on June 9, 2022, 6:31 p.m.