Files in USCbiostats/ENmixUSC
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip (USC version)
.Rbuildignore
.gitignore
DESCRIPTION
ENmix.Rproj
NAMESPACE
R/ComBat.mc.R
R/QCfilter.R
R/QCinfo.R
R/bmiq.mc.R
R/ctrlsva.R
R/mpreprocess.R
R/multifreqpoly.R
R/nmode.mc.R
R/norm.quantile.R
R/normalize.quantile.450k.R
R/oxBS.MLE.R
R/pcrplot.R
R/plotCtrl.R
R/preprocessENmix.R
R/rcp.R
R/relic.R
R/rm.outlier.R
R/utility.R
build/vignette.rds
inst/CITATION
inst/NEWS.Rd
inst/oxBS.MLE.RData
inst/testData/testData.R
inst/testData/testData.out
inst/unitTests/testDigests.rda
inst/unitTests/test_enmix.R
man/B2M.Rd
man/ComBat.mc.Rd
man/M2B.Rd
man/QCfilter.Rd
man/QCinfo.Rd
man/bmiq.mc.Rd
man/ctrlsva.Rd
man/freqpoly.Rd
man/getBeta.Rd
man/mpreprocess.Rd
man/multifreqpoly.Rd
man/nmode.mc.Rd
man/norm.quantile.Rd
man/normalize.quantile.450k.Rd
man/oxBS.MLE.Rd
man/pcrplot.Rd
man/plotCtrl.Rd
man/preprocessENmix.Rd
man/rcp.Rd
man/relic.Rd
man/resultsChamp/failedSample.txt
man/resultsChamp/raw_SampleCluster.jpg
man/resultsChamp/raw_densityPlot.pdf
man/resultsChamp/raw_mdsPlot.pdf
man/rm.outlier.Rd
tests/runTests.R
vignettes/ENmix.Rnw
vignettes/fig/BISULFITE_CONVERSION_I.jpg
vignettes/fig/NEGATIVE.jpg
vignettes/fig/NON-POLYMORPHIC.jpg
vignettes/fig/NORM_ACGT.jpg
vignettes/fig/dist.jpg
vignettes/fig/pcr_diag.jpg
