Man pages for USCbiostats/ENmixUSC
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip (USC version)
| B2M | Convert Beta value to M value. |
| bmiq.mc | A multi-processor wrapper of BMIQ method |
| ComBat.mc | A multi-processor wrapper for ComBat method. |
| ctrlsva | Non-negative control surrogate variables |
| freqpoly | Frequency polygon plot |
| getBeta | Extract Beta value. |
| M2B | Convert M value to Beta value. |
| mpreprocess | A pipeline to perform background correction, dye bias... |
| multifreqpoly | Frequency polygon plot to display data distribution. |
| nmode.mc | Estimating number of mode in methylaion data for each probe. |
| normalize.quantile.450k | Quantile normalization. |
| norm.quantile | Quantile normalization. |
| oxBS.MLE | oxBS-MLE. |
| pcrplot | Principal component regression plot |
| plotCtrl | Plot internal controls of 450K or MethylationEPIC BeadChip. |
| preprocessENmix | The ENmix background correction for HumanMethylation 450 and... |
| QCfilter | Sample or CpG probe filter. |
| QCinfo | QC information. |
| rcp | Regression on Correlated Probes(RCP) |
| relic | RELIC dye bias correction method for Illumina... |
| rm.outlier | Filtering out outlier and/or low quality values |
