Man pages for USCbiostats/aphylo
Statistical Inference of Annotated Phylogenetic Trees

ape-methodsAPE wrappers
aphylo-classAnnotated Phylogenetic Tree
aphylo_cvLeave-one-out Cross Validation
aphylo_estimates-classParameter estimation of Annotated Phylogenetic Trees
aphylo-indexIndexing aphylo objects
aphylo-methodsPlot and print methods for 'aphylo' objects
aphylo-modelFormulas in 'aphylo'
aphylo-packageStatistical Inference in Annotated Phylogenetic Trees
approx_geodesicApproximation of Geodesic distances using Matrix Powers
as.phyloExtensions to the 'as.phylo' function
bpriorDefault priors for aphylo_mcmc
fakeexperimentFake Experimental Data
faketreeFake Phylogenetic Tree
list_offspringList each nodes' offspring
LogLikeComputes Log-likelihood
mislabelSwitch labels acoording to mislabeling probabilities
panther-treeReads PANTHER db trees
plot.aphylo_prediction_scoreVisualize predictions
plot_logLikPlot Log-Likelihood function of the model
plot_multivariateMultiavariate plot (surface)
posterior-probabilitiesPosterior probabilities based on parameter estimates
rdrop_annotationsRandomly drop leaf annotations
sim_annotated_treeSimulation of Annotated Phylogenetic Trees
sim_fun_on_treeSimulate functions on a ginven tree
sim_treeRandom tree generation
statesMatrix of states
USCbiostats/aphylo documentation built on Jan. 24, 2019, 8:01 a.m.