as_tblout: Tabular output format for a scan

In USCbiostats/pfamscanr: An R client for EMBL-EBI's PfamScan API

Description

This resembles the behavior of HMM when the option --tblout is passed. The resulting file is space separated with varying widths, so the user should not rely on the file to be a fixed-width-file.

Usage

as_tblout(x, output = "", append = FALSE)

Arguments

x	A data.frame as returned by pfamscan().
output	Character scalar. Output file where to write the table
append	Passed to cat().

Value

Prints the file on screen and returns the tabular format as a data.frame invisible.

Examples

data("P35858", package = "pfamscanr")
as_tblout(P35858)

USCbiostats/pfamscanr documentation built on Dec. 31, 2020, 5:37 p.m.