pfamscan_process: Process pfamscan result
In USCbiostats/pfamscanr: An R client for EMBL-EBI's PfamScan API
Description
Usage
Arguments
Details
Value
References
Description
Process pfamscan result
Usage
1
Arguments
x
A string as that returned by EBI pfamscan's API.
Details
Internal use only
Value
A data.frame with the following columns:
-
seq_id
-
alignment_start
-
alignment_end
-
envelope_start
-
envelope_end
-
hmm_acc
-
hmm_name
-
type
-
hmm_start
-
hmm_end
-
hmm_length
-
bit_score
-
E.value
-
significance
-
clan
References
https://www.ebi.ac.uk/Tools/pfa/pfamscan/
USCbiostats/pfamscanr documentation built on Dec. 31, 2020, 5:37 p.m.
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Description Usage Arguments Details Value References
Description
Process pfamscan result
Usage
1 |
Arguments
x |
A string as that returned by EBI pfamscan's API. |
Details
Internal use only
Value
A data.frame with the following columns:
-
seq_id -
alignment_start -
alignment_end -
envelope_start -
envelope_end -
hmm_acc -
hmm_name -
type -
hmm_start -
hmm_end -
hmm_length -
bit_score -
E.value -
significance -
clan
References
https://www.ebi.ac.uk/Tools/pfa/pfamscan/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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