createBubbleGraph: Create overview bubble graph of GLRI data

In USGS-R/GLRItcl: GLRI toxic contaminants

Description

Create overview bubble graph of GLRI data. Testing Mac.

Usage

createBubbleGraph(DF, xCol = "class", yCol = "site", colCol = "max",
  radCol = "percentDetect", colorTitle = "Maximum Concentration",
  radiusTitle = "Frequency of detection [%]", colorScale = c(0.01, 0.1, 1,
  10, Inf), radiusScale = c(0, 20, 40, 60, 80, 100), countCol = "count",
  savePDF = FALSE, fileName = "bubble.pdf", colorGradient = FALSE,
  radiusGradient = TRUE)

Arguments

DF	data.frame
xCol	string column from DF defining x axis
yCol	string column from DF defining y axis
colCol	string column from DF defining color
radCol	string column from DF defining radius
colorTitle	string title for color legend
radiusTitle	string title for radius legend
colorScale	vector scale for color
radiusScale	vector scale for radius
countCol	string column from DF defining count
savePDF	logical
fileName	string
colorGradient	logical use a linear color gradient or discrete colors (number set by colorScale)
radiusGradient	logical use a linear radius gradient or discrete radii (number set by radiusScale)

Examples

genericCensoringValue <- function(qualifier,value, detectionLimit){
   valueToUse <- ifelse("<" == qualifier, detectionLimit, value)
   return(valueToUse)
 }
filteredData <- filterGLRIData(QWPortalGLRI, genericCensoringValue)
wideDF <- wideGLRIData(filteredData)
keyDF <- pcodeINFO
classCol <- "class"
pCodeCol <- "parameter_cd"
dataByClass <- PCodeClassSummary(wideDF,keyDF,pCodeCol,classCol)
summaryByClass <- statClassSummary(dataByClass)
createBubbleGraph(summaryByClass, xCol="class", yCol="site", colCol="max", radCol="percentDetect",colorTitle="Maxiumum",radiusTitle="Detection",countCol="count")

USGS-R/GLRItcl documentation built on May 9, 2019, 6:09 p.m.