View source: R/get_metab_data.R
get_metab_data | R Documentation |
Quick access to metabolism input data (data
arg only)
get_metab_data(site, sitetime = NA, doobs = NA, dosat = NA, depth = NA,
wtr = NA, par = NA, disch = NULL, veloc = NULL, sitedate = NULL,
doinit = NULL, gpp = NULL, er = NULL, K600 = NULL, K600lwr = NULL,
K600upr = NULL, gppinit = NULL, erinit = NULL, K600init = NULL,
dischdaily = NULL, velocdaily = NULL, start_date = NA, end_date = NA,
tag = "0.0.0", strategy = "get_metab_data", date = Sys.time(),
model = "metab_mle", model_args = "list()", simplify = TRUE,
verbose = TRUE)
site |
site names |
sitetime |
Data Source for mean solar time. See Data Source Format below. |
doobs |
Data Source for dissolved oxygen concentrations. See Data Source Format below. |
dosat |
Data Source for dissolved oxygen saturation concentrations. See Data Source Format below. |
depth |
Data Source for mean stream depth. See Data Source Format below. |
wtr |
Data Source for water temperature. See Data Source Format below. |
par |
Data Source for light (photosynthetically available radiation, PAR). See Data Source Format below. |
disch |
Data Source for unit-value stream discharge, for use in identifying daily priors or fixed values for K600. See Data Source Format below. |
veloc |
Data Source for unit-value flow velocity, for use in identifying daily priors or fixed values for K600. See Data Source Format below. |
sitedate |
Data Source for the dates of interest. See Data Source Format below. |
doinit |
Data Source for the first DO observation on each date to model, for use in data simulation. See Data Source Format below. |
gpp |
Data Source for daily gross primary productivity rates for use in data simulation. See Data Source Format below. |
er |
Data Source for ecosystem respiration rates for use in data simulation. See Data Source Format below. |
K600 |
Data Source for reaeration rates for use in data simulation. See Data Source Format below. |
K600lwr |
Data Source for lower bound on reaeration rates for use in data simulation. See Data Source Format below. |
K600upr |
Data Source for upper bound on reaeration rates for use in data simulation. See Data Source Format below. |
gppinit |
Data Source for initial values of daily gross primary productivity rates for use in likelihood maximization. See Data Source Format below. |
erinit |
Data Source for initial values of ecosystem respiration rates for use in likelihood maximization. See Data Source Format below. |
K600init |
Data Source for initial values of reaeration rates for use in likelihood maximization. See Data Source Format below. |
dischdaily |
Data Source for daily mean stream discharge, for use in identifying daily priors or fixed values for K600. See Data Source Format below. |
velocdaily |
Data Source for daily mean flow velocity, for use in identifying daily priors or fixed values for K600. See Data Source Format below. |
start_date |
NA or datetime, to be coerced with
|
end_date |
NA or datetime, to be coerced with |
tag |
character of form "1.0.2" that uniquely identifies this set of modeling runs. |
strategy |
character, or vector of length sites, describing this set of modeling runs in concise English. |
date |
POSIXct indicating the date of config construction. It is strongly recommended to use the default. |
model |
character. the name of the metabolism model to construct |
model_args |
character, in R language, specifying any arguments to pass to the model function |
simplify |
logical. If there's only one data.frame to retrieve, remove it from the enclosing list? |
verbose |
logical. give progress messages? |
a list of data.frames, or if simplify=TRUE and there's only one data.frame, a single data.frame of input data
## Not run:
md <- get_metab_data('nwis_08062500')
md <- get_metab_data('styx_004001')
login_sb()
md <- get_metab_data('styx_004001', doobs=choose_data_source(
'doobs','styx_004001','sim',type='pred',src='160411 0.0.18'))
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.