basic.model.comp: Basic model comparison plots, for Xpose 4

Description Usage Arguments Details Value Author(s) See Also Examples

Description

This creates a stack of four plots, comparing PRED, IPRED, WRES (or CWRES), and IWRES estimates for the two specified model fits.

Usage

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basic.model.comp(object, object.ref = NULL, onlyfirst = FALSE,
  inclZeroWRES = FALSE, subset = xsubset(object), main = "Default",
  force.wres = FALSE, ...)

Arguments

object

An xpose.data object.

object.ref

An xpose.data object. If not supplied, the user will be prompted.

onlyfirst

Logical value indicating whether only the first row per individual is included in the plot.

inclZeroWRES

Logical value indicating whether rows with WRES=0 is included in the plot. The default is TRUE.

subset

A string giving the subset expression to be applied to the data before plotting. See xsubset.

main

The title of the plot. If "Default" then a default title is plotted. Otherwise the value should be a string like "my title" or NULL for no plot title.

force.wres

Force function to use WRES?

...

Other arguments passed to link{xpose.plot.default}.

Details

Four basic model comparison plots are displayed in sequence.

Conditional weighted residuals (CWRES) require some extra steps to calculate. See compute.cwres for details.

A wide array of extra options controlling xyplots are available. See xpose.plot.default for details.

Value

Returns a stack of plots comprising comparisons of PRED, IPRED, WRES (or CWRES) and IWRES for the two specified runs.

Author(s)

E. Niclas Jonsson, Mats Karlsson, Andrew Hooker & Justin Wilkins

See Also

xpose.plot.default, xpose.panel.default, xyplot, compute.cwres, xpose.prefs-class, xpose.data-class

Other specific functions: absval.cwres.vs.cov.bw, absval.cwres.vs.pred.by.cov, absval.cwres.vs.pred, absval.iwres.cwres.vs.ipred.pred, absval.iwres.vs.cov.bw, absval.iwres.vs.idv, absval.iwres.vs.ipred.by.cov, absval.iwres.vs.ipred, absval.iwres.vs.pred, absval.wres.vs.cov.bw, absval.wres.vs.idv, absval.wres.vs.pred.by.cov, absval.wres.vs.pred, absval_delta_vs_cov_model_comp, addit.gof, autocorr.cwres, autocorr.iwres, autocorr.wres, basic.gof, cat.dv.vs.idv.sb, cat.pc, cov.splom, cwres.dist.hist, cwres.dist.qq, cwres.vs.cov, cwres.vs.idv.bw, cwres.vs.idv, cwres.vs.pred.bw, cwres.vs.pred, cwres_wres_vs_x, dOFV.vs.cov, dOFV.vs.id, dOFV1.vs.dOFV2, data.checkout, dv.preds.vs.idv, dv.vs.idv, dv.vs.ipred.by.cov, dv.vs.ipred.by.idv, dv.vs.ipred, dv.vs.pred.by.cov, dv.vs.pred.by.idv, dv.vs.pred.ipred, dv.vs.pred, gof, ind.plots.cwres.hist, ind.plots.cwres.qq, ind.plots, ipred.vs.idv, iwres.dist.hist, iwres.dist.qq, iwres.vs.idv, kaplan.plot, par_cov_hist, par_cov_qq, parm.vs.cov, parm.vs.parm, pred.vs.idv, ranpar.vs.cov, runsum, wres.dist.hist, wres.dist.qq, wres.vs.idv.bw, wres.vs.idv, wres.vs.pred.bw, wres.vs.pred, xpose.VPC.both, xpose.VPC.categorical, xpose.VPC, xpose4-package

Examples

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## Not run: 
## We expect to find the required NONMEM run and table files for runs
## 5 and 6 in the current working directory
xpdb5 <- xpose.data(5)
xpdb6 <- xpose.data(6)

## A vanilla plot, without prompts
basic.model.comp(xpdb5, xpdb6, prompt = FALSE)

## Custom colours and symbols, no user IDs
basic.model.comp.cwres(xpdb5, xpdb6, cex=0.6, pch=8, col=1, ids=NULL)

## End(Not run)

UUPharmacometrics/xpose4 documentation built on April 3, 2018, 12:05 p.m.