Man pages for UW-GAC/GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness

admixMapadmixMap
admixMapMMadmixMapMM
assocTestAggregateAggregate Association Testing
assocTestMMSNP Genotype Association Testing with Mixed Models
assocTestSingleGenotype Association Testing with Mixed Models
defunctDefunct functions in package 'GENESIS'
deprecatedDeprecated functions in package 'GENESIS'
fitNullMMFit a Mixed Model Under the Null Hypothesis
fitNullModelFit a Model Under the Null Hypothesis
fitNullRegFit a Regression Model Under the Null Hypothesis
GENESIS-packageGENetic EStimation and Inference in Structured samples...
HapMap_ASW_MXL_KINGmatMatrix of Pairwise Kinship Coefficient Estimates for the...
kin2gdsStore kinship matrix in GDS
king2matConvert KING text output to an R Matrix
kingToMatrixConvert KING text output to an R Matrix
makeSparseMatrixMake a sparse matrix from a dense matrix or a table of...
pcairPC-AiR: Principal Components Analysis in Related Samples
pcairPartitionPartition a sample into an ancestry representative 'unrelated...
pcrelatePC-Relate: Model-Free Estimation of Recent Genetic...
pcrelate_deprecatedPC-Relate: Model-Free Estimation of Recent Genetic...
pcrelateMakeGRMCreates a Genetic Relationship Matrix (GRM) of Pairwise...
pcrelateReadInbreedCreate a Table of Inbreeding Coefficient Estimates from...
pcrelateReadKinshipCreate a Table of Pairwise Kinship Coefficient and IBD...
pcrelateToMatrixCreates a Genetic Relationship Matrix (GRM) of Pairwise...
plot.pcairPC-AiR: Plotting PCs
print.pcairPC-AiR: Principal Components Analysis in Related Samples
sample_annotation_1KGAnnotation for 1000 genomes Phase 3 samples
varCompCIVariance Component Confidence Intervals
UW-GAC/GENESIS documentation built on Nov. 16, 2018, 5 a.m.