fastqcShiny: Run fastQC shiny app

In UofABioinformaticsHub/fastqcRShiny: Shiny App for loading multiple FastQC reports

Description

Returns a shiny app interface to parse many fastQC objects using the package ngsReports

Usage

fastqcShiny(fastqcInput = NULL)

Arguments

fastqcInput

can be a FastqcFileList, fastqcDataList, or simply a character vector of paths to fastqc files.

Details

Currently some plots can take a while to render if the FastqcDataList passed to fastqcInput has many elements

Value

UI data for fastQC shiny.

Examples

## Not run: 
Get the files included with the package ngsReports
packageDir <- system.file("extdata", package = "ngsReports")
fileList <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- getFastqcData(fileList)

# Run the Shiny app
fastqcShiny(fdl)

## End(Not run)

UofABioinformaticsHub/fastqcRShiny documentation built on June 10, 2021, 10:39 p.m.