make_ENSEMBL_symbol_map: make_ENSEMBL_symbol_map

In VCCRI/C3: An R package for cross-species compendium-based cell-type identification for transcriptomic profile

Description

This helper function returns a data frame with two columns containing all Ensembl gene IDs and their corresponding gene IDs for the given species

Usage

make_ENSEMBL_symbol_map(species, ensemblId.toMapping, geneID.forMapping)

Arguments

species	Species name in the form 'hsapiens'
ensemblId.toMapping	The valid gene ID names to which the user cell data will be converted, default is "ensembl_gene_id"
geneID.forMapping	The valid gene ID names of the user cell data, default is "external_gene_name"

Details

This helper function returns a data frame with two columns containing all Ensembl gene IDs and their corresponding gene IDs for the given species

Value

This helper function returns a data frame with two columns containing all Ensembl gene IDs and their corresponding gene IDs for the given species

Examples

human.ensembl.symbol.map<-make_ENSEMBL_symbol_map('hsapiens', ensemblId.toMapping="ensembl_gene_id", geneID.forMapping="external_gene_name")
head(human.ensembl.symbol.map)

VCCRI/C3 documentation built on May 14, 2019, 8:41 a.m.