scDissim: CIDR Dissimilarity Matrix

In VCCRI/CIDR: Clustering through Imputation and Dimensionality Reduction

Description

computes the CIDR dissimilarity matrix.

Usage

## S4 method for signature 'scData'
scDissim(object, correction = FALSE, threads = 0,
  useStepFunction = TRUE)

Arguments

object	an scData class object.
correction	Boolean; if TRUE, Cailliez correction is applied; by default FALSE.
threads	integer; number of threads to be used; by default 0, which uses all available threads.
useStepFunction	Boolean; if TRUE (default), a step function is used as the imputation weighting function; if FALSE, a logistic function fitted by wThreshold is used as the imputation weighting function. The logistic function implementation was written by Willem Van Der Byl.

Value

an updated scData class object with the following attribute updated

dissim

the CIDR dissimilarity matrix.

Examples

example(cidr)

VCCRI/CIDR documentation built on May 9, 2019, 9:41 p.m.