Description Usage Arguments Value Examples
performs principal coordinates analysis on the CIDR dissimilarity matrix.
1 2 |
object |
an scData class object. |
plotPC |
Boolean; if |
an updated scData class object with the following attributes updated
eigenvalues |
all eigenvalues (positive and negative) output by the principal coordinates analysis. |
PC |
principal coordinates. |
variation |
proportion of variation explained by each of the principal coordinates. |
1 |
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