rle_to_WIG: load(file="c:/BAM/scRNA_polyA/FC.RData") gtf_file <-...
In VCCRI/Sierra: PolyA counting and differential transcript usage analysis for scRNA-seq data
rle_to_WIG R Documentation
load(file="c:/BAM/scRNA_polyA/FC.RData")
gtf_file <- "u:/Reference/mm10/cellranger_genes.gtf.gz"
gtf_gr <- rtracklayer::import(gtf_file)
Description
load(file="c:/BAM/scRNA_polyA/FC.RData")
gtf_file <- "u:/Reference/mm10/cellranger_genes.gtf.gz"
gtf_gr <- rtracklayer::import(gtf_file)
Usage
rle_to_WIG(rle_input, gtf_gr = gtf_gr, geneSymbol = "Dnajc19")
Arguments
rle_input
rle input object
gtf_gr
GTF file as genomics ranges pbject
geneSymbol
name of gene to interrogate
VCCRI/Sierra documentation built on July 3, 2023, 6:39 a.m.
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| rle_to_WIG | R Documentation |
load(file="c:/BAM/scRNA_polyA/FC.RData") gtf_file <- "u:/Reference/mm10/cellranger_genes.gtf.gz" gtf_gr <- rtracklayer::import(gtf_file)
Description
load(file="c:/BAM/scRNA_polyA/FC.RData") gtf_file <- "u:/Reference/mm10/cellranger_genes.gtf.gz" gtf_gr <- rtracklayer::import(gtf_file)
Usage
rle_to_WIG(rle_input, gtf_gr = gtf_gr, geneSymbol = "Dnajc19")
Arguments
rle_input |
rle input object |
gtf_gr |
GTF file as genomics ranges pbject |
geneSymbol |
name of gene to interrogate |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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