pruneCorrelationLinks: Filter Correlation Links

In VEuPathDB/plot.data: Create `data.table`s of Ready to Plot Data

Filter Correlation Links

Description

This function filters CorrelationLinkList by pValue and correlationCoef

Usage

pruneCorrelationLinks(
  object,
  correlationCoefThreshold = NULL,
  pValueThreshold = NULL,
  verbose = c(TRUE, FALSE)
)

## S4 method for signature 'CorrelationLinkList'
pruneCorrelationLinks(
  object,
  correlationCoefThreshold = NULL,
  pValueThreshold = NULL,
  verbose = c(TRUE, FALSE)
)

## S4 method for signature 'CorrelationNetwork'
pruneCorrelationLinks(
  object,
  correlationCoefThreshold = NULL,
  pValueThreshold = NULL,
  verbose = c(TRUE, FALSE)
)

Arguments

object	CorrelationLinkList or CorrelationNetwork
correlationCoefThreshold	threshold to filter edges by correlation coefficient. Default is NULL. Any links with absolute correlation coefficients below this threshold will be removed.
pValueThreshold	threshold to filter edges by p-value. Default is NULL. Any links with p-values above this threshold will be removed.
verbose	boolean indicating if timed logging is desired

Value

CorrelationLinkList or CorrelationNetwork

VEuPathDB/plot.data documentation built on Feb. 20, 2025, 6:33 p.m.