prep.data | R Documentation |
Prepare the data
prep.data(data, SID, formula.se, formula.sp, formula.omega)
data |
A data-frame with no missing values containing TP, TN, FP, FN, 'SID' and co-variables(if necessary). |
SID |
A string indicating the name of the column with the study ID. |
formula.se |
An optional object of class "formula": A symbolic description of a linear model to be fitted to mean E(x) of sensitivity in the logit scale. the default (when no covariates are included) symbolic description is SID ~ 1 corresponds to the model formula E(x) = mu = exp(a)/(1 + exp(a)) where a is the intercept. When the covariates are categorical and the relative measures are needed it is important to remove the intercept from the model to obtain meaningful parameters. EG for a covariate 'Test' with two levels(A and B) and relative sensitivity of B versus A is needed, then the correct formula is SID ~ Test - 1. See **** . Further information on interpretation of parameters in logistic regression see *** |
formula.sp |
An optional object of class "formula": A symbolic description of a linear model to be fitted to specificity data. When no covariates are included, the formula is not necessary. By default the covariate information for sensitivity is used. |
formula.omega |
An optional object of class "formula": A symbolic description of a linear model to be fitted to the copula function. When no covariates are included, the formula is not necessary. By default the covariate information for sensitivity is used. |
Victoria N Nyaga
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