countPositionHelp: Help 'countNonExon' to count the numbers of non-exon...

In VVVVVan/nonexonmap: R Package Template

Description

countPositionHelp is a help function for countNonExon. It takes the data frame and analyze the number of non-exon sequences on a specific place in reference sequences.

Usage

countPositionHelp(informationdf)

Arguments

informationdf

the data frame that store the reads and reference information for funciton to analyze. Should compute from findNonExon, verifyNonExon or relateive functions.

Value

A list of lists with order of reference sequences name, aligned index on reference sequence, number of aligned reads on the spot.

Examples

readsFile <- system.file("extdata/testdata", "RRHreads.fasta",
package = "nonexonmap")
transcriptsFile <- system.file("extdata/testdata", "RRHtranscript.fasta",
package = "nonexonmap")
## Not run: 
dataFrame <- findNonExon(readsFile, transcriptsFile)
countPositionHelp(dataFrame)

## End(Not run)

VVVVVan/nonexonmap documentation built on May 30, 2019, 11:48 p.m.