usePosition: A closure for function 'positionNonExon'.
In VVVVVan/nonexonmap: R Package Template

Description Usage Arguments Value Examples

usePosition form different output file for different purpose of using function positionNonExon To ensure that the output file of positionNonExon is in BAM format.

1	usePosition(purpose)

purpose

output file form to determine the outputFile name, a string.

a function.

readsFile <- system.file("extdata/testdata", "RRHreads.fasta", package = "nonexonmap")
transcriptsFile <- system.file("extdata/testdata", "RRHtranscript.fasta", package = "nonexonmap")
## Not run: 
findNonExon <- usePosition("find")
dataFrame1 <- findNonExon(readsFile, transcriptsFile)

## End(Not run)