API for Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
| Global functions | |
|---|---|
| CV | Source code |
| CosSim | Source code |
| Getfiles | Man page Source code |
| MHmakeRandomString | Source code |
| addGenericMS1LookupResults | Source code |
| addMetFragResults | Source code |
| addProbmetab | Source code |
| addProbmetabResults | Source code |
| addSiriusResults | Source code |
| add_mzi_cols | Source code |
| adductCheckMS1Lookup | Source code |
| align | Source code |
| alignAndMatch | Source code |
| assessPuritySingle | Man page Source code |
| averageAllFragSpectra | Man page |
| averageAllFragSpectra,purityA-method | Man page |
| averageCluster | Source code |
| averageInterFragSpectra | Man page |
| averageInterFragSpectra,purityA-method | Man page |
| averageIntraFragSpectra | Man page |
| averageIntraFragSpectra,purityA-method | Man page |
| averageSpectra | Man page |
| averageSpectra,purityD-method | Man page |
| averageSpectraSingle | Man page Source code |
| average_spectra | Source code |
| average_xcms_grouped_msms | Source code |
| average_xcms_grouped_msms_indiv | Source code |
| calculateFWHM | Source code |
| cdpc | Source code |
| check_ppm | Source code |
| check_topn | Source code |
| cleanUp | Source code |
| clustering | Source code |
| combineAnnotations | Man page Source code |
| combineRow | Source code |
| combineScoresGrp | Source code |
| concat_name | Source code |
| connect2db | Source code |
| convert2Raw | Source code |
| covar | Source code |
| createDatabase | Man page Source code |
| createMSP | Man page |
| createMSP,purityA-method | Man page |
| create_database | Man page Source code |
| create_enriched_peaklist | Source code |
| custom_dbWriteTable | Source code Source code |
| dimsPredictPurity | Man page |
| dimsPredictPurity,purityD-method | Man page |
| dimsPredictPuritySingle | Man page Source code |
| dimsPredictPuritySingleMz | Source code |
| dpc | Source code |
| export2sqlite | Source code |
| export_2_sqlite | Source code |
| filterFragSpectra | Man page |
| filterFragSpectra,purityA-method | Man page |
| filterPrecursors | Source code |
| filterSMeta | Source code |
| filterp | Man page |
| filterp,purityD-method | Man page |
| flag_peaks | Source code |
| flag_remove | Man page Source code |
| frag4feature | Man page |
| frag4feature,purityA-method | Man page |
| fsub1 | Source code |
| fsub2 | Source code |
| full_minmax | Source code |
| getAnnotationSummary | Source code |
| getAvSpectraForGrp | Source code |
| getBestScore | Source code |
| getBoundedSiriusScore | Source code |
| getEic | Source code |
| getGroupPeakLink | Source code |
| getMS2scans | Source code |
| getMetaCols | Source code |
| getP | Man page |
| getP,purityD-method | Man page |
| getPeakCols | Source code |
| getScanLoop | Source code |
| getScanPeaks | Source code |
| getScanPeaksSqlite | Source code |
| getSmeta | Source code |
| getTic | Source code |
| getXcmsGrpDetails | Source code |
| getXcmsSmSummary | Source code |
| get_additional_mzml_meta | Man page Source code |
| get_ann_summary | Source code |
| get_av_spectra_for_db | Source code |
| get_column_info | Source code Source code |
| get_create_query | Source code Source code |
| get_full_peak_width | Source code |
| get_group_peak_link | Source code |
| get_init_purity | Source code |
| get_interp_purity | Source code |
| get_iso_intensity_range | Source code |
| get_isolation_offsets | Source code |
| get_mslevel_tracking | Source code |
| get_mz_sim_scanid | Source code |
| get_prec_scans | Source code |
| get_query_spectra_list_c_peak_group | Source code |
| get_query_spectra_list_s_peak | Source code |
| get_rt_idx | Source code |
| get_topn | Source code |
| get_xcms_sm_summary | Source code |
| getmrdf | Source code |
| getmrdf_standard | Source code |
| getmrdf_standard_all | Source code |
| getname | Source code |
| getpeaks | Source code |
| getscans | Source code |
| group1d | Source code |
| groupPeaks | Man page |
| groupPeaks,purityD-method | Man page |
| groupPeaksEx | Man page Source code |
| grpByXCMS | Source code |
| im_tag | Source code |
| inchikeyInsert | Source code |
| inchikeySelect | Source code |
| initialize,purityD-method | Man page |
| insertNewInchikeys | Source code |
| iwNormGauss | Man page Source code |
| iwNormQE.5 | Man page Source code |
| iwNormRcosine | Man page Source code |
| linearPurity | Source code |
| match_2_library | Source code |
| match_targets | Source code |
| matchi | Source code |
| medGroup | Source code |
| median_match_results | Source code |
| missing_prec_scan | Source code |
| msPurity | Man page |
| msPurity-package | Man page |
| msfrProcess | Source code |
| mzComparePPMrange | Source code |
| mzMLProcess | Source code |
| mzmatching | Source code |
| negMinMax | Source code |
| overlap | Source code |
| parse_file | Source code |
| pcalc | Man page Source code |
| performHc | Source code |
| plotPurity | Source code |
| pp4file | Source code |
| ppm_error | Source code |
| predictPurityExp | Source code |
| predictPurityLCMSloop | Source code |
| pullPid | Source code |
| purityA | Man page Source code |
| purityD | Man page |
| purityD-class | Man page |
| purityX | Man page Source code |
| queryVlibrary | Source code |
| queryVlibrarySingle | Source code |
| ra_calc | Source code |
| real_or_rest | Source code Source code |
| removeIsotopes | Source code |
| remove_spectra | Source code |
| resetGrpedMS2 | Source code |
| rsd | Source code |
| rsde | Source code |
| scanPeaks4db | Source code |
| scanPeaksFromfiledf | Source code |
| scan_peaks_4_db | Source code |
| setFlagMatrix | Source code |
| setPurityFlagMatrix | Source code |
| setPuritySpectraGrp | Source code |
| set_snr_ra | Source code |
| show,purityA-method | Man page |
| show,purityD-method | Man page |
| show,purityX-method | Man page |
| snrFilter | Source code |
| spectralMatching | Man page Source code |
| spectral_matching | Man page Source code |
| splinePurity | Source code |
| splitInchis | Source code |
| stde | Source code Source code |
| stderror | Source code |
| subtract | Man page |
| subtract,purityD-method | Man page |
| subtractMZ | Man page Source code |
| subtractSingle | Source code |
| sum_calc_peaklist | Source code |
| updateCol | Source code |
| updateColName | Source code |
| update_cn_order | Source code Source code |
| validate | Man page |
| validate,purityA-method | Man page |
| vecToStringInStmt | Source code |
| vecToStringInsertStmt | Source code |
| write.msp | Source code |
| writeOut | Man page |
| writeOut,purityD-method | Man page |
| write_msp_single | Source code |
| xcmsGroupPurity | Source code |
| xcmsSinglePurity | Source code |
