findComp: Find the number of component with batch-effect and component...
In ViktoriaShamkina/RNA-SeqDataNormalization: Normalizes RNA-Seq data

Description Usage Arguments Value

View source: R/FindComponents.R

Find the number of component with batch-effect and component with library size

findComp(
  X,
  libsize = 0,
  batch = 0,
  ncomp = 5,
  fun = "logcosh",
  alg.typ = "parallel",
  method = c("R", "C")
)

`X`	a data matrix with n rows representing samples and m columns representing genes.
`libsize`	numeric vector of sample library size values. Length - number of samples.
`batch`	numeric vector of batch value for sample. Length - number of samples.
`ncomp`	number of components

A list of the following components: compBatchNum - component number with batch effect compLibsizeNum - component number with library size S - weight matrix A - metagene matrix

ViktoriaShamkina/RNA-SeqDataNormalization documentation built on Dec. 18, 2021, 6:17 p.m.