contigextract: Extracting contig information
In VilainLab/methometR: methometR: Extracting methylation information from Optical Genome Maps
Description
Usage
Arguments
Value
Examples
View source: R/methylationAnalysis_Step1.r
Description
Extracting contig information
Usage
1
contigextract(contigRefxmap, chrom, startPos, endPos)
Arguments
contigRefxmap
character. Contig xmap data.
chrom
character. Chromosome of interest.
startPos
integer.Start position.
endPos
integer. End position.
Value
dataframe with data extracted from xmap.
Examples
1
2
3
refcontigXmap <- system.file("extdata", "Cmapdir/output/contigs/exp_refineFinal1_sv/merged_smaps/ContigRef.xmap", package="methometR")
modxmap <- readingXmap(refcontigXmap)
extractedInfo<-contigextract(contigRefxmap = modxmap, chrom = 4, startPos = 100000, endPos = 200000)
VilainLab/methometR documentation built on Dec. 18, 2021, 6:17 p.m.
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Description Usage Arguments Value Examples
View source: R/methylationAnalysis_Step1.r
Description
Extracting contig information
Usage
1 | contigextract(contigRefxmap, chrom, startPos, endPos)
|
Arguments
contigRefxmap |
character. Contig xmap data. |
chrom |
character. Chromosome of interest. |
startPos |
integer.Start position. |
endPos |
integer. End position. |
Value
dataframe with data extracted from xmap.
Examples
1 2 3 | refcontigXmap <- system.file("extdata", "Cmapdir/output/contigs/exp_refineFinal1_sv/merged_smaps/ContigRef.xmap", package="methometR")
modxmap <- readingXmap(refcontigXmap)
extractedInfo<-contigextract(contigRefxmap = modxmap, chrom = 4, startPos = 100000, endPos = 200000)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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