quant.msstats.ptm: Example of output from proteinSummarizaiton function for PTM...
In Vitek-Lab/MSstatsTMTPTM: Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Description
Usage
Format
Details
Examples
Description
It is made from raw.ptm.
It is the output of proteinSummarization function from MSstatsTMT.
It should include the required columns as below.
The variables are as follows:
Usage
1
Format
A data frame with 19205 rows and 8 variables.
Details
Run : MS run ID
Protein : Protein ID with modification site mapped in. Ex.
Protein_1002_S836
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT
mixture.
Mixture : Unique ID for TMT mixture.
Examples
1
Vitek-Lab/MSstatsTMTPTM documentation built on Oct. 25, 2021, 10:55 a.m.
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Description Usage Format Details Examples
Description
It is made from raw.ptm.
It is the output of proteinSummarization function from MSstatsTMT.
It should include the required columns as below.
The variables are as follows:
Usage
1 |
Format
A data frame with 19205 rows and 8 variables.
Details
Run : MS run ID
Protein : Protein ID with modification site mapped in. Ex. Protein_1002_S836
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT mixture.
Mixture : Unique ID for TMT mixture.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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