msiq: use MSIQ to quantify transcript expression from multiple...

In Vivianstats/MSIQ: Joint modeling of multiple RNA-seq samples for accurate isoform quantification

Description

use MSIQ to quantify transcript expression from multiple samples

Usage

msiq(D, gtf_path, bam_path, A = 5, B = 2, ncores)

Arguments

D	An integer specifying the number of RNA-seq sample supplied
gtf_path	A character specifying the full path of the .gtf file
bam_path	A character vector. Each element gives the full path of one .bam file.
A	An integer specifying the first parameter used the Beta prior. Default is 5.
B	An integer specifying the second parameter used the Beta prior. Default is 2.
ncores	An integer denoting the number of cores used for parallel computation.

Value

Save the estimation results to a text file transcript_summary.txt.

Vivianstats/MSIQ documentation built on May 10, 2019, 5:17 a.m.