msiq: use MSIQ to quantify transcript expression from multiple...

Description Usage Arguments Value

Description

use MSIQ to quantify transcript expression from multiple samples

Usage

1
msiq(D, gtf_path, bam_path, A = 5, B = 2, ncores)

Arguments

D

An integer specifying the number of RNA-seq sample supplied

gtf_path

A character specifying the full path of the .gtf file

bam_path

A character vector. Each element gives the full path of one .bam file.

A

An integer specifying the first parameter used the Beta prior. Default is 5.

B

An integer specifying the second parameter used the Beta prior. Default is 2.

ncores

An integer denoting the number of cores used for parallel computation.

Value

Save the estimation results to a text file transcript_summary.txt.


Vivianstats/MSIQ documentation built on May 10, 2019, 5:17 a.m.