Description Usage Format Details Source
This dataset contains fields from the DrugBank database The variables are as follows:
| 1 | 
A data frame with 6530 rows and 295 variables
WebAddress web address for database (when combined with the Unique_DB_ID entry this will provide a direct link to the online database entry e.g. Web address : "www.HMDB.ca/metabolites/" + Unique_DB_ID : "HMDB00001" = http://www.HMDB.ca/metabolites/HMDB00001)
Unique_DB_ID. DrugBank unique reference number (DB00091 – DB09028)
name. DrugBank entry name
monoisotopic_weight. Monoisotopic weight of DrugBank entry (7.016004 – 1197.54)
SMILES. Canonical SMILES code of DrugBank entry
molecular_formula. Molecular formula of DrugBank entry
group. drug type group see unique(DrugBank$group)
cas_number. CAS registry number of DrugBank entry
compound_class. compound class information utilized by annoCompoundClass function.
 - 296. (n=286) all molecular descriptors extracted from the chemistry development kit using the rcdk package and a 1024bit chemical fingerprint obtained using the chemmineR package in the form of an index rather than full length 1024 binary representation. see table below for details:
| category | className | molDescNames | 
| topological | SmallRingDescriptor | MD_nSmallRings | 
| topological | SmallRingDescriptor | MD_nAromRings | 
| topological | SmallRingDescriptor | MD_nRingBlocks | 
| topological | SmallRingDescriptor | MD_nAromBlocks | 
| topological | SmallRingDescriptor | MD_nRings3 | 
| topological | SmallRingDescriptor | MD_nRings4 | 
| topological | SmallRingDescriptor | MD_nRings5 | 
| topological | SmallRingDescriptor | MD_nRings6 | 
| topological | SmallRingDescriptor | MD_nRings7 | 
| topological | SmallRingDescriptor | MD_nRings8 | 
| topological | SmallRingDescriptor | MD_nRings9 | 
| topological | FractionalPSADescriptor | MD_tpsaEfficiency | 
| topological | ZagrebIndexDescriptor | MD_Zagreb | 
| constitutional | XLogPDescriptor | MD_XLogP | 
| topological | WienerNumbersDescriptor | MD_WPATH | 
| topological | WienerNumbersDescriptor | MD_WPOL | 
| hybrid | WHIMDescriptor | MD_Wlambda1.unity | 
| hybrid | WHIMDescriptor | MD_Wlambda2.unity | 
| hybrid | WHIMDescriptor | MD_Wlambda3.unity | 
| hybrid | WHIMDescriptor | MD_Wnu1.unity | 
| hybrid | WHIMDescriptor | MD_Wnu2.unity | 
| hybrid | WHIMDescriptor | MD_Wgamma1.unity | 
| hybrid | WHIMDescriptor | MD_Wgamma2.unity | 
| hybrid | WHIMDescriptor | MD_Wgamma3.unity | 
| hybrid | WHIMDescriptor | MD_Weta1.unity | 
| hybrid | WHIMDescriptor | MD_Weta2.unity | 
| hybrid | WHIMDescriptor | MD_Weta3.unity | 
| hybrid | WHIMDescriptor | MD_WT.unity | 
| hybrid | WHIMDescriptor | MD_WA.unity | 
| hybrid | WHIMDescriptor | MD_WV.unity | 
| hybrid | WHIMDescriptor | MD_WK.unity | 
| hybrid | WHIMDescriptor | MD_WG.unity | 
| hybrid | WHIMDescriptor | MD_WD.unity | 
| topological | WeightedPathDescriptor | MD_WTPT.1 | 
| topological | WeightedPathDescriptor | MD_WTPT.2 | 
| topological | WeightedPathDescriptor | MD_WTPT.3 | 
| topological | WeightedPathDescriptor | MD_WTPT.4 | 
| topological | WeightedPathDescriptor | MD_WTPT.5 | 
| constitutional | WeightDescriptor | MD_MW | 
| topological | VAdjMaDescriptor | MD_VAdjMat | 
| topological | VABCDescriptor | MD_VABC | 
| topological | TPSADescriptor | MD_TopoPSA | 
| constitutional | RuleOfFiveDescriptor | MD_LipinskiFailures | 
| constitutional | RotatableBondsCountDescriptor | MD_nRotB | 
| topological | PetitjeanShapeIndexDescriptor | MD_topoShape | 
| topological | PetitjeanShapeIndexDescriptor | MD_geomShape | 
| topological | PetitjeanNumberDescriptor | MD_PetitjeanNumber | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.X | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.Y | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.Z | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.XY | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.XZ | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.YZ | 
| geometrical | MomentOfInertiaDescriptor | MD_MOMI.R | 
| topological | MDEDescriptor | MD_MDEC.11 | 
| topological | MDEDescriptor | MD_MDEC.12 | 
| topological | MDEDescriptor | MD_MDEC.13 | 
| topological | MDEDescriptor | MD_MDEC.14 | 
| topological | MDEDescriptor | MD_MDEC.22 | 
| topological | MDEDescriptor | MD_MDEC.23 | 
| topological | MDEDescriptor | MD_MDEC.24 | 
| topological | MDEDescriptor | MD_MDEC.33 | 
| topological | MDEDescriptor | MD_MDEC.34 | 
| topological | MDEDescriptor | MD_MDEC.44 | 
| topological | MDEDescriptor | MD_MDEO.11 | 
| topological | MDEDescriptor | MD_MDEO.12 | 
| topological | MDEDescriptor | MD_MDEO.22 | 
| topological | MDEDescriptor | MD_MDEN.11 | 
| topological | MDEDescriptor | MD_MDEN.12 | 
| topological | MDEDescriptor | MD_MDEN.13 | 
| topological | MDEDescriptor | MD_MDEN.22 | 
| topological | MDEDescriptor | MD_MDEN.23 | 
| topological | MDEDescriptor | MD_MDEN.33 | 
| constitutional | MannholdLogPDescriptor | MD_MLogP | 
| constitutional | LongestAliphaticChainDescriptor | MD_nAtomLAC | 
| geometrical | LengthOverBreadthDescriptor | MD_LOBMAX | 
| geometrical | LengthOverBreadthDescriptor | MD_LOBMIN | 
| constitutional | LargestPiSystemDescriptor | MD_nAtomP | 
| constitutional | LargestChainDescriptor | MD_nAtomLC | 
| topological | KierHallSmartsDescriptor | MD_khs.sLi | 
| topological | KierHallSmartsDescriptor | MD_khs.ssBe | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssBe | 
| topological | KierHallSmartsDescriptor | MD_khs.ssBH | 
| topological | KierHallSmartsDescriptor | MD_khs.sssB | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssB | 
| topological | KierHallSmartsDescriptor | MD_khs.sCH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.dCH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssCH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.tCH | 
| topological | KierHallSmartsDescriptor | MD_khs.dsCH | 
| topological | KierHallSmartsDescriptor | MD_khs.aaCH | 
| topological | KierHallSmartsDescriptor | MD_khs.sssCH | 
| topological | KierHallSmartsDescriptor | MD_khs.ddC | 
| topological | KierHallSmartsDescriptor | MD_khs.tsC | 
| topological | KierHallSmartsDescriptor | MD_khs.dssC | 
| topological | KierHallSmartsDescriptor | MD_khs.aasC | 
| topological | KierHallSmartsDescriptor | MD_khs.aaaC | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssC | 
| topological | KierHallSmartsDescriptor | MD_khs.sNH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.sNH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssNH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.dNH | 
| topological | KierHallSmartsDescriptor | MD_khs.ssNH | 
| topological | KierHallSmartsDescriptor | MD_khs.aaNH | 
| topological | KierHallSmartsDescriptor | MD_khs.tN | 
| topological | KierHallSmartsDescriptor | MD_khs.sssNH | 
| topological | KierHallSmartsDescriptor | MD_khs.dsN | 
| topological | KierHallSmartsDescriptor | MD_khs.aaN | 
| topological | KierHallSmartsDescriptor | MD_khs.sssN | 
| topological | KierHallSmartsDescriptor | MD_khs.ddsN | 
| topological | KierHallSmartsDescriptor | MD_khs.aasN | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssN | 
| topological | KierHallSmartsDescriptor | MD_khs.sOH | 
| topological | KierHallSmartsDescriptor | MD_khs.dO | 
| topological | KierHallSmartsDescriptor | MD_khs.ssO | 
| topological | KierHallSmartsDescriptor | MD_khs.aaO | 
| topological | KierHallSmartsDescriptor | MD_khs.sF | 
| topological | KierHallSmartsDescriptor | MD_khs.sSiH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssSiH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.sssSiH | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssSi | 
| topological | KierHallSmartsDescriptor | MD_khs.sPH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssPH | 
| topological | KierHallSmartsDescriptor | MD_khs.sssP | 
| topological | KierHallSmartsDescriptor | MD_khs.dsssP | 
| topological | KierHallSmartsDescriptor | MD_khs.sssssP | 
| topological | KierHallSmartsDescriptor | MD_khs.sSH | 
| topological | KierHallSmartsDescriptor | MD_khs.dS | 
| topological | KierHallSmartsDescriptor | MD_khs.ssS | 
| topological | KierHallSmartsDescriptor | MD_khs.aaS | 
| topological | KierHallSmartsDescriptor | MD_khs.dssS | 
| topological | KierHallSmartsDescriptor | MD_khs.ddssS | 
| topological | KierHallSmartsDescriptor | MD_khs.sCl | 
| topological | KierHallSmartsDescriptor | MD_khs.sGeH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssGeH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.sssGeH | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssGe | 
| topological | KierHallSmartsDescriptor | MD_khs.sAsH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssAsH | 
| topological | KierHallSmartsDescriptor | MD_khs.sssAs | 
| topological | KierHallSmartsDescriptor | MD_khs.sssdAs | 
| topological | KierHallSmartsDescriptor | MD_khs.sssssAs | 
| topological | KierHallSmartsDescriptor | MD_khs.sSeH | 
| topological | KierHallSmartsDescriptor | MD_khs.dSe | 
| topological | KierHallSmartsDescriptor | MD_khs.ssSe | 
| topological | KierHallSmartsDescriptor | MD_khs.aaSe | 
| topological | KierHallSmartsDescriptor | MD_khs.dssSe | 
| topological | KierHallSmartsDescriptor | MD_khs.ddssSe | 
| topological | KierHallSmartsDescriptor | MD_khs.sBr | 
| topological | KierHallSmartsDescriptor | MD_khs.sSnH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssSnH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.sssSnH | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssSn | 
| topological | KierHallSmartsDescriptor | MD_khs.sI | 
| topological | KierHallSmartsDescriptor | MD_khs.sPbH3 | 
| topological | KierHallSmartsDescriptor | MD_khs.ssPbH2 | 
| topological | KierHallSmartsDescriptor | MD_khs.sssPbH | 
| topological | KierHallSmartsDescriptor | MD_khs.ssssPb | 
| topological | KappaShapeIndicesDescriptor | MD_Kier1 | 
| topological | KappaShapeIndicesDescriptor | MD_Kier2 | 
| topological | KappaShapeIndicesDescriptor | MD_Kier3 | 
| topological | HybridizationRatioDescriptor | MD_HybRatio | 
| electronic | HBondDonorCountDescriptor | MD_nHBDon | 
| electronic | HBondAcceptorCountDescriptor | MD_nHBAcc | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.1 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.2 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.3 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAVH.1 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAVH.2 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAVH.3 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.4 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.5 | 
| geometrical | GravitationalIndexDescriptor | MD_GRAV.6 | 
| topological | FragmentComplexityDescriptor | MD_fragC | 
| topological | FMFDescriptor | MD_FMF | 
| topological | EccentricConnectivityIndexDescriptor | MD_ECCEN | 
| electronic | CPSADescriptor | MD_PPSA.1 | 
| electronic | CPSADescriptor | MD_PPSA.2 | 
| electronic | CPSADescriptor | MD_PPSA.3 | 
| electronic | CPSADescriptor | MD_PNSA.1 | 
| electronic | CPSADescriptor | MD_PNSA.2 | 
| electronic | CPSADescriptor | MD_PNSA.3 | 
| electronic | CPSADescriptor | MD_DPSA.1 | 
| electronic | CPSADescriptor | MD_DPSA.2 | 
| electronic | CPSADescriptor | MD_DPSA.3 | 
| electronic | CPSADescriptor | MD_FPSA.1 | 
| electronic | CPSADescriptor | MD_FPSA.2 | 
| electronic | CPSADescriptor | MD_FPSA.3 | 
| electronic | CPSADescriptor | MD_FNSA.1 | 
| electronic | CPSADescriptor | MD_FNSA.2 | 
| electronic | CPSADescriptor | MD_FNSA.3 | 
| electronic | CPSADescriptor | MD_WPSA.1 | 
| electronic | CPSADescriptor | MD_WPSA.2 | 
| electronic | CPSADescriptor | MD_WPSA.3 | 
| electronic | CPSADescriptor | MD_WNSA.1 | 
| electronic | CPSADescriptor | MD_WNSA.2 | 
| electronic | CPSADescriptor | MD_WNSA.3 | 
| electronic | CPSADescriptor | MD_RPCG | 
| electronic | CPSADescriptor | MD_RNCG | 
| electronic | CPSADescriptor | MD_RPCS | 
| electronic | CPSADescriptor | MD_RNCS | 
| electronic | CPSADescriptor | MD_THSA | 
| electronic | CPSADescriptor | MD_TPSA | 
| electronic | CPSADescriptor | MD_RHSA | 
| electronic | CPSADescriptor | MD_RPSA | 
| topological | ChiPathDescriptor | MD_SP.0 | 
| topological | ChiPathDescriptor | MD_SP.1 | 
| topological | ChiPathDescriptor | MD_SP.2 | 
| topological | ChiPathDescriptor | MD_SP.3 | 
| topological | ChiPathDescriptor | MD_SP.4 | 
| topological | ChiPathDescriptor | MD_SP.5 | 
| topological | ChiPathDescriptor | MD_SP.6 | 
| topological | ChiPathDescriptor | MD_SP.7 | 
| topological | ChiPathDescriptor | MD_VP.0 | 
| topological | ChiPathDescriptor | MD_VP.1 | 
| topological | ChiPathDescriptor | MD_VP.2 | 
| topological | ChiPathDescriptor | MD_VP.3 | 
| topological | ChiPathDescriptor | MD_VP.4 | 
| topological | ChiPathDescriptor | MD_VP.5 | 
| topological | ChiPathDescriptor | MD_VP.6 | 
| topological | ChiPathDescriptor | MD_VP.7 | 
| topological | ChiPathClusterDescriptor | MD_SPC.4 | 
| topological | ChiPathClusterDescriptor | MD_SPC.5 | 
| topological | ChiPathClusterDescriptor | MD_SPC.6 | 
| topological | ChiPathClusterDescriptor | MD_VPC.4 | 
| topological | ChiPathClusterDescriptor | MD_VPC.5 | 
| topological | ChiPathClusterDescriptor | MD_VPC.6 | 
| topological | ChiClusterDescriptor | MD_SC.3 | 
| topological | ChiClusterDescriptor | MD_SC.4 | 
| topological | ChiClusterDescriptor | MD_SC.5 | 
| topological | ChiClusterDescriptor | MD_SC.6 | 
| topological | ChiClusterDescriptor | MD_VC.3 | 
| topological | ChiClusterDescriptor | MD_VC.4 | 
| topological | ChiClusterDescriptor | MD_VC.5 | 
| topological | ChiClusterDescriptor | MD_VC.6 | 
| topological | ChiChainDescriptor | MD_SCH.3 | 
| topological | ChiChainDescriptor | MD_SCH.4 | 
| topological | ChiChainDescriptor | MD_SCH.5 | 
| topological | ChiChainDescriptor | MD_SCH.6 | 
| topological | ChiChainDescriptor | MD_SCH.7 | 
| topological | ChiChainDescriptor | MD_VCH.3 | 
| topological | ChiChainDescriptor | MD_VCH.4 | 
| topological | ChiChainDescriptor | MD_VCH.5 | 
| topological | ChiChainDescriptor | MD_VCH.6 | 
| topological | ChiChainDescriptor | MD_VCH.7 | 
| topological | CarbonTypesDescriptor | MD_C1SP1 | 
| topological | CarbonTypesDescriptor | MD_C2SP1 | 
| topological | CarbonTypesDescriptor | MD_C1SP2 | 
| topological | CarbonTypesDescriptor | MD_C2SP2 | 
| topological | CarbonTypesDescriptor | MD_C3SP2 | 
| topological | CarbonTypesDescriptor | MD_C1SP3 | 
| topological | CarbonTypesDescriptor | MD_C2SP3 | 
| topological | CarbonTypesDescriptor | MD_C3SP3 | 
| topological | CarbonTypesDescriptor | MD_C4SP3 | 
| electronic | BPolDescriptor | MD_bpol | 
| constitutional | BondCountDescriptor | MD_nB | 
| hybrid | BCUTDescriptor | MD_BCUTw.1l | 
| hybrid | BCUTDescriptor | MD_BCUTw.1h | 
| hybrid | BCUTDescriptor | MD_BCUTc.1l | 
| hybrid | BCUTDescriptor | MD_BCUTc.1h | 
| hybrid | BCUTDescriptor | MD_BCUTp.1l | 
| hybrid | BCUTDescriptor | MD_BCUTp.1h | 
| constitutional | BasicGroupCountDescriptor | MD_nBase | 
| topological | AutocorrelationDescriptorPolarizability | MD_ATSp1 | 
| topological | AutocorrelationDescriptorPolarizability | MD_ATSp2 | 
| topological | AutocorrelationDescriptorPolarizability | MD_ATSp3 | 
| topological | AutocorrelationDescriptorPolarizability | MD_ATSp4 | 
| topological | AutocorrelationDescriptorPolarizability | MD_ATSp5 | 
| topological | AutocorrelationDescriptorMass | MD_ATSm1 | 
| topological | AutocorrelationDescriptorMass | MD_ATSm2 | 
| topological | AutocorrelationDescriptorMass | MD_ATSm3 | 
| topological | AutocorrelationDescriptorMass | MD_ATSm4 | 
| topological | AutocorrelationDescriptorMass | MD_ATSm5 | 
| topological | AutocorrelationDescriptorCharge | MD_ATSc1 | 
| topological | AutocorrelationDescriptorCharge | MD_ATSc2 | 
| topological | AutocorrelationDescriptorCharge | MD_ATSc3 | 
| topological | AutocorrelationDescriptorCharge | MD_ATSc4 | 
| topological | AutocorrelationDescriptorCharge | MD_ATSc5 | 
| constitutional | AtomCountDescriptor | MD_nAtom | 
| constitutional | AromaticBondsCountDescriptor | MD_nAromBond | 
| constitutional | AromaticAtomsCountDescriptor | MD_naAromAtom | 
| electronic | APolDescriptor | MD_apol | 
| constitutional | ALOGPDescriptor | MD_ALogP | 
| constitutional | ALOGPDescriptor | MD_ALogp2 | 
| constitutional | ALOGPDescriptor | MD_AMR | 
| constitutional | AcidicGroupCountDescriptor | MD_nAcid | 
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