lipidAbbrev: lipid abbreviations table for pubmed text mining

In WMBEdmands/CompMS2miner: an automatable metabolite identification, visualization and data-sharing R package for high-resolution LC-MS datasets

Description

This dataset contains fields from the LMSD database classifications and abbreviations (http://www.lipidmaps.org/data/classification/lipid_cns.html) The variables are as follows:

Usage

data(lipidAbbrev)

Format

A data frame with 18 rows and 3 columns

Details

1. Class lipid class name this string is intended to be searched in PubMed.

2. Abbreviation abbreviation for lipid class.

3. regexpr an R regular expression to try to detect the lipid class in a database compound name. e.g. Searching PubMed for the string "SM(18:1/14:0)" for example will return no PubMed ids however searching using "sphingomyelin" will return a more representative number of PubMed abstract Ids.

Source

http://www.lipidmaps.org/data/classification/lipid_cns.html

WMBEdmands/CompMS2miner documentation built on May 9, 2019, 10:02 p.m.