FindMarkerModule: Module markers of identity classes

In WWXkenmo/ICAnet: What the Package Does (One Line, Title Case)

Module markers of identity classes

Description

Finds markers (differentially activated modules) for identity classes

Usage

FindMarkerModule(
  obj,
  identity,
  assay = "IcaNet",
  MQC = TRUE,
  pvalue = 0.05,
  rank.order = "myAUC"
)

Arguments

obj	a Seurat object
identity	the identity id
assay	which assay shall be tested (Default: "IcaNet")
MQC	whether to control the statistical significance level of module (Default: TRUE)
pvalue	integer value to indicate the threshold to filter the module (Default: 0.05)
rank.order	rank the results based on which feature (Default: "myAUC")

Value

a matrix object which containing the significant module information

WWXkenmo/ICAnet documentation built on April 11, 2022, 5:44 a.m.