TF_Net_Generate: Convert feather file into motif-gene boolean network

In WWXkenmo/ICAnet: What the Package Does (One Line, Title Case)

Convert feather file into motif-gene boolean network

Description

This function is provided for convert feather file into motif-gene boolean network, the feather file containing the motif binding informtion for human/mouse/fly species, the files could be downloaded from cisTarget databases https://resources.aertslab.org/cistarget/

Usage

TF_Net_Generate(feather.readPath, cutoff = 1)

Arguments

feather.readPath	a character value to indicate the path which saved the feather file
cutoff	a cutoff to determine how to filter the unwanted Motif-gene links (default: 1)

Value

a matrix object which containing the boolean network of TF binding motif-gene

WWXkenmo/ICAnet documentation built on April 11, 2022, 5:44 a.m.