randCyto: Subset of the 'extdata' data in the 'flowWorkspaceData'...

In Waller-SUSAN/gateR: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation

Subset of the 'extdata' data in the 'flowWorkspaceData' package

Description

A sample dataset containing information about flow cytometry data with two binary conditions and four markers. The data are a random subset of the 'extdata' data in the 'flowWorkspaceData' package found on Bioconductor https://bioconductor.org/packages/release/data/experiment/html/flowWorkspaceData.html and formatted for 'gateR' input. The selected markers are arcsinh transformed.

Usage

randCyto

Format

A data frame with 11763 rows and 7 variables:

id

cell ID number

g1

binary condition #1

g2

binary condition #2

arcsinh_CD4

arcsinh-transformed CD4

arcsinh_CD38

arcsinh-transformed CD38

arcsinh_CD8

arcsinh-transformed CD8

arcsinh_CD3

arcsinh-transformed CD3

Source

https://github.com/lance-waller-lab/gateR/blob/master/README.md

Examples

head(randCyto)

Waller-SUSAN/gateR documentation built on Feb. 5, 2024, 12:54 p.m.